BAC Information

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BAC

Clone NameMSMg01-362F06
Chromosome16 (Build37)
Map Location 51,580,715 - 51,729,618
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc54, LOC672778, 5330426P16Rik, EG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362F06.T7 (MSMg01no362_f06.b1)MSMg01-362F06.TJ (MSMg01no362_f06.g1)
ACCAG471039AG471040
length784794
length of high quality
(start - end)		483 (44 - 526)457 (75 - 531)
definitionCHROMAT_FILE: MSMg01no362_f06.b1 PHD_FILE: MSMg01no362_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:39 2005CHROMAT_FILE: MSMg01no362_f06.g1 PHD_FILE: MSMg01no362_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,580,715 - 51,581,194)(51,729,162 - 51,729,618)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTATCAGATTAGTTTTCCAATCATGAGAGCTGGCCAAGAGTAATT
CCTAGAGCATGCTTCTAAAGGCAGGTGCCTTGGCAAAGACAGAGCAGAAA
CAGCAGGGGCAGAAGAGGTGAAAAATGACTGCCAAAATCCTTGCTGGGAT
GCTCCACTATTTCAAGAAGACCAGCCTCAGATAGAGAAAATGGAGCAGAG
CCTAGACCTGAAGTGAGTGCTTGAGCAGAGTCATATTTTCAGCTTATAGG
CAAGCCACTGCTTTTCATCTTAGCTCCAGGATTTGTGACGAGCAAGATCC
CATGAAGTTTTGTGAAGTATTCTGCAACTTATTAGTAATGGTTCAGCAGT
CGAGTGTAAAGGTTGTTAGAGGCAGGTGCGCCAGCTCACTCTCATCCCTA
CTGCTGTTCTATGTGTGTCCTCTTACAGAGAGGTGGATGTGAAAAGGGCC
ACAGAAAGCACCACAAAATACTCACTGCTCACTGACACTGAGCAGTTATG
TGACTGTTTGCTCTGCCATAACATGCTTGTTATACGCTCATAATATCTCA
GGGTTAAGGGCAGTATTTATTGATGAGTACTTTCCTATCTCGTAATATCT
GCCCCAAAAACCCCCCCACCAATCCCCCGGGGCTTGAAAACAATAAAGCG
TTCCGACTTCCTCATTTGTACCAAACTACTTTTATTCCCCCCCTCTATTT
CTCGGTATAGGCTTTTTTATTACCTCCCCCTCTN

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAATGAGAACTTCTGCCTTCCTACTA
GTTGTAAGGATAAAAGGATTTAATGAGAAAATGATGAAACAGAGAGTTGG
TTTTAAAAATCATTTCTTCTTTTCCAACAAAGAAGCTATTGATCTTGGAG
AAGGGGATGGCTAAGTAGAGGAAGACATTCCTTTGATTTCAAAGGTTTAA
TATCTTTGAAATTTTAAAAATGGTATTCATTTGCACTAATTATTTTGAAA
AGAAAAGATTAGGAGGATATATTTGTTACAGTGAAATAATAGAGGTGACT
AATTATAATTACATGCTCATTATTTTCAGTGTGTGCCCTACAACATGTAG
GAGGTCAATGTAGAGGTCTGTTTGTAGGTAAGGTTTTGAAGAAAGTTGGG
ATAACCCTTTGAAAGCTAGTCTCCTTTTATCAACCCCATGCTTAGTTTTT
ATCAAGTGTCTCCAGAGTGAAATAATTCTCCAGCTTGATAAGAGGCTTAT
CTTAGCTGTTTTCTTTCTAAATTATTCATCCTAAAAGGAATTATTATTTC
GCAGGGCGGGCGGAAAAATGGCCTCAACTGCCCATAGNACCTTGCCCTTT
CTTGCTGGAGTCTCCAACTTCCGCTCCGCCTCCCTTATTTCCCGTTTCTC
CCCTCCCTCTTTTTCCTATGTCCCTGTTATTTTCTAAATTTTTTCGCTGG
TCTCTCCCTCGGTTTGCTGTATTTCTCTCTTTTCCACTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_f06.b1 MSMg01no362_f06.b1 CHROMAT_FILE:
MSMg01no362_f06.b1 PHD_FILE: MSMg01no362_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:39 2005
         (483 letters)



>mm_chr16_51580512_51581394
          Length = 883

 Score =  882 bits (456), Expect = 0.0
 Identities = 474/480 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagttatcagattagttttccaatcatgagagctggccaagagtaattcctaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttatcagattagttttccaatcatgagagctggccaagagtaattcctaga 263

                                                                       
Query: 64  gcatgcttctaaaggcaggtgccttggcaaagacagagcagaaacagcaggggcagaaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcatgcttctaaaggcaggtgccttggcaaagacagagcagaaacagcaggggcagaaga 323

                                                                       
Query: 124 ggtgaaaaatgactgccaaaatccttgctgggatgctccactatttcaagaagaccagcc 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtgaaaaatgactgccaaaatcctggctgggatgctccactatttcaagaagaccagcc 383

                                                                       
Query: 184 tcagatagagaaaatggagcagagcctagacctgaagtgagtgcttgagcagagtcatat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcagatagagaaaatggagcagagcctagacctgaagtgagtgcttgagcagagtcatat 443

                                                                       
Query: 244 tttcagcttataggcaagccactgcttttcatcttagctccaggatttgtgacgagcaag 303
           |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcagctgataggcaagctactgcttttcatcttagctccaggatttgtgacgagcaag 503

                                                                       
Query: 304 atcccatgaagttttgtgaagtattctgcaacttattagtaatggttcagcagtcgagtg 363
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 atcccatgaagttttgtgaagtattctgcaatttattagtaatggttcagcagtcgagtg 563

                                                                       
Query: 364 taaaggttgttagaggcaggtgcgccagctcactctcatccctactgctgttctatgtgt 423
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaaggttgttagaggcaggttcaccagctcactctcatccctactgctgttctatgtgt 623

                                                                       
Query: 424 gtcctcttacagagaggtggatgtgaaaagggccacagaaagcaccacaaaatactcact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtcctcttacagagaggtggatgtgaaaagggccacagaaagcaccacaaaatactcact 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_f06.g1 MSMg01no362_f06.g1 CHROMAT_FILE:
MSMg01no362_f06.g1 PHD_FILE: MSMg01no362_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:39 2005
         (457 letters)



>mm_chr16_51728962_51729818
          Length = 857

 Score =  814 bits (421), Expect = 0.0
 Identities = 448/457 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgagaacttctgccttcctactagttgtaaggataaaaggatttaatgagaaaatga 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 657 taatgagaacttctgccttcctactagttctaaggataaaaggatttaatgagaaaatga 598

                                                                       
Query: 61  tgaaacagagagttggttttaaaaatcatttcttcttttccaacaaagaagctattgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgaaacagagagttggttttaaaaatcatttcttcttttccaacaaagaagctattgatc 538

                                                                       
Query: 121 ttggagaaggggatggctaagtagaggaagacattcctttgatttcaaaggtttaatatc 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttggagaaggggctggctaagtagaggaagacattcctttgatttcaaaggtttaatatc 478

                                                                       
Query: 181 tttgaaattttaaaaatggtattcatttgcactaattattttgaaaagaaaagattagga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cttgaaattttaaaaatggtattcatttgcactaattattttgaaaagaaaagattagga 418

                                                                       
Query: 241 ggatatatttgttacagtgaaataatagaggtgactaattataattacatgctcattatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggatatatttgttacagtgaaataatagaggtgactaattataattacatgctcattatt 358

                                                                       
Query: 301 ttcagtgtgtgccctacaacatgtaggaggtcaatgtagaggtctgtttgtaggtaaggt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 357 ttcagtgtgtgccctacaacatgtaggaggtcaatgtagaggtccgtttgtaggtaaggt 298

                                                                       
Query: 361 tttgaagaaagttgggataaccctttgaaagctagtctccttttatcaaccccatgctta 420
           ||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 297 tttaaagagagttgggacaaccccttgaaagctagtctccttttatcaaccccatgctta 238

                                                
Query: 421 gtttttatcaagtgtctccagagtgaaataattctcc 457
            ||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttttttatcaagtgtctccagagtgaaataattctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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