BAC Information

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BAC

Clone NameMSMg01-362J21
Chromosome16 (Build37)
Map Location 46,798,457 - 46,982,831
singlet/doubletdoublet
Overlap genenone
Upstream genePhldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
Downstream geneLOC628757, LOC628776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362J21.T7 (MSMg01no362_j21.b1)MSMg01-362J21.TJ (MSMg01no362_j21.g1)
ACCAG471260AG471261
length744757
length of high quality
(start - end)		550 (47 - 596)486 (78 - 563)
definitionCHROMAT_FILE: MSMg01no362_j21.b1 PHD_FILE: MSMg01no362_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:03 2005CHROMAT_FILE: MSMg01no362_j21.g1 PHD_FILE: MSMg01no362_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,982,288 - 46,982,831)(46,798,457 - 46,798,938)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAGAGAACTTTTCACCTAGACTATGACCCACTTCTGCTGACAG
TAAAGTCTTTACAAAAGGGGAGAATGCTCCTCTTTTGGAGCCTATTTATT
AGCCAGGAAATGCATACCAGGCTTGGTTAAGATATTATTTCTACTGTAAA
TATCTAGTTTTACCCTTCCGTGTTTCCACTCCAGTCACTGCATACAGCTC
ACAGAGCTCAGCGTGACTTAGTGTGCCTTTCTCTGCATGGCTTCCAGGGC
TCCTCCTTTCTCACCACTCCCTCCAGAGCAAAGACTTGGCACTGTCATTC
AGCAAGCCTATAATCCCTGCAAGTCTCTCAAAAGCACATGGCGGAAGGGA
TTTCTTCCTTCCTTTCCTGCTTTCTTCTGCCCACACCCCCTACCTTTTTC
CATCAACAGGGAGCCCAGGCTCAACCTCCTTTGTGAAGGTAACTGTTCTC
ATTGTTCTGGTTCTACAGCTCCTGCAGCATTTACAGTACCAACAACATTC
AAAAGATCCTATTCCTGAACCAGACTAAAGGCTCCTGAAAAATTTAAAAA
CTGTCATTTTATGGTCCCAGCCCTTATCTTCCCAACACTTAGAGAACACT
TGTGTCTGGGATAAAATCTATTACTTTAAATTGTTATCCAAACATTTATT
TATGGATTTATTTTATTACTTACTTACTTACTTACTTATTTGTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATGAAAGGTTAAAAGCATGG
GTGACTTGAAGTTCTGCAAGAGCATGTTCTCAGGCATGCTGCTCTTCTAG
AATTTTAATTTGATTTTGATTTTGTTTAAATGGGTTCTTCTTTCTTCTAA
CTACACACACTCATTAGAAATGTCAAATATAATGCTCTTGGCAGTGCAGT
GATATTGTCCTTTTTTTTTCTTTTTTTGAAAGAGAGCTATTTCAATTGCA
TAATTGCCAGATAAAACAGACCTATTCTTATTGACATATAGTCAGCAGCT
GATTGATTGTCCACAAGCTGTTGATATTTGCCTCTCTTGTTTACCTCATC
AATCATCGGCTGGACATTTTCTTTCTCCGTCTGGGAGTTGGCAGTATGAA
ACGAGCATCCAGTAGCAACTTAAAAAATGCTTCAGCTTATCTTCTGGTTT
CCCCCATTGCTAGGTTGTTAAAGTTTAAATGTCCTACACAGGGTCTTGAG
TCATGATCCTGAGAATGAGTAGTCATTTCCTTTATCATAGGTTCTGGGAT
CTACTAAATGTGAATGCAGTGGATGGTGAGTGAACATGGGCTTGAGTTTA
ACACACTTACTGGATTAAAAATTGGAAGTTGTTTTACCTTGAGCAAATAT
TAAACGATTCCAAGCAGTTGCTTCTTCCACTATTAATGGATAATTCAAAT
ATGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_j21.b1 MSMg01no362_j21.b1 CHROMAT_FILE:
MSMg01no362_j21.b1 PHD_FILE: MSMg01no362_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:03 2005
         (550 letters)



>mm_chr16_46982084_46983033
          Length = 950

 Score = 1036 bits (536), Expect = 0.0
 Identities = 542/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagagaacttttcacctagactatgacccacttctgctgacagtaaagtcttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaattcaaagagaacttttcacctagactatgacccacttctgctgacagtaaagtcttt 689

                                                                       
Query: 65  acaaaaggggagaatgctcctcttttggagcctatttattagccaggaaatgcataccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acaaaaggggagaatgctcctcttttggagcctatttattagccaggaaatgcataccag 629

                                                                       
Query: 125 gcttggttaagatattatttctactgtaaatatctagttttacccttccgtgtttccact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gcttggttaagatattatttctactgtaaatatctagttttacccttccgtgtttccact 569

                                                                       
Query: 185 ccagtcactgcatacagctcacagagctcagcgtgacttagtgtgcctttctctgcatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccagtcactgcatacagctcacagagctcagcgtgacttagtgtgcctttctctgcatgg 509

                                                                       
Query: 245 cttccagggctcctcctttctcaccactccctccagagcaaagacttggcactgtcattc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 508 cttccagggctcctcctttctcaccactccctccagagcaaagacttggcgctgtcattc 449

                                                                       
Query: 305 agcaagcctataatccctgcaagtctctcaaaagcacatggcggaagggatttcttcctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agcaagcctataatccctgcaagtctctcaaaagcacatggcggaagggatttcttcctt 389

                                                                       
Query: 365 cctttcctgctttcttctgcccacaccccctacctttttccatcaacagggagcccaggc 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctttccttctttcttctgcccacaccccctacctttttccatcaacagggagcccaggc 329

                                                                       
Query: 425 tcaacctcctttgtgaaggtaactgttctcattgttctggttctacagctcctgcagcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcaacctcctttgtgaaggtaactgttctcattgttctggttctacagctcctgcagcat 269

                                                                       
Query: 485 ttacagtaccaacaacattcaaaagatcctattcctgaaccagactaaaggctcctgaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttacagtaccaacaacattcaaaagatcctattcctgaaccagactaaaggctcctgaaa 209

               
Query: 545 aatt 548
           ||||
Sbjct: 208 aatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_j21.g1 MSMg01no362_j21.g1 CHROMAT_FILE:
MSMg01no362_j21.g1 PHD_FILE: MSMg01no362_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:03 2005
         (486 letters)



>mm_chr16_46798257_46799142
          Length = 886

 Score =  932 bits (482), Expect = 0.0
 Identities = 482/482 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatgaaaggttaaaagcatgggtgacttgaagttctgcaagagcatgttctcaggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatgaaaggttaaaagcatgggtgacttgaagttctgcaagagcatgttctcaggcat 260

                                                                       
Query: 61  gctgctcttctagaattttaatttgattttgattttgtttaaatgggttcttctttcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgctcttctagaattttaatttgattttgattttgtttaaatgggttcttctttcttc 320

                                                                       
Query: 121 taactacacacactcattagaaatgtcaaatataatgctcttggcagtgcagtgatattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactacacacactcattagaaatgtcaaatataatgctcttggcagtgcagtgatattg 380

                                                                       
Query: 181 tcctttttttttctttttttgaaagagagctatttcaattgcataattgccagataaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctttttttttctttttttgaaagagagctatttcaattgcataattgccagataaaac 440

                                                                       
Query: 241 agacctattcttattgacatatagtcagcagctgattgattgtccacaagctgttgatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacctattcttattgacatatagtcagcagctgattgattgtccacaagctgttgatat 500

                                                                       
Query: 301 ttgcctctcttgtttacctcatcaatcatcggctggacattttctttctccgtctgggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcctctcttgtttacctcatcaatcatcggctggacattttctttctccgtctgggag 560

                                                                       
Query: 361 ttggcagtatgaaacgagcatccagtagcaacttaaaaaatgcttcagcttatcttctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggcagtatgaaacgagcatccagtagcaacttaaaaaatgcttcagcttatcttctgg 620

                                                                       
Query: 421 tttcccccattgctaggttgttaaagtttaaatgtcctacacagggtcttgagtcatgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcccccattgctaggttgttaaagtttaaatgtcctacacagggtcttgagtcatgat 680

             
Query: 481 cc 482
           ||
Sbjct: 681 cc 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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