BAC Information

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BAC

Clone NameMSMg01-362N09
Chromosome16 (Build37)
Map Location 19,967,170 - 19,967,672
singlet/doubletsinglet
Overlap geneKlhl6
Upstream geneHira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
Downstream geneLOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362N09.T7 (MSMg01no362_n09.b1)MSMg01-362N09.TJ (MSMg01no362_n09.g1)
ACCAG471427AG471428
length757772
length of high quality
(start - end)		574 (43 - 616)503 (71 - 573)
definitionCHROMAT_FILE: MSMg01no362_n09.b1 PHD_FILE: MSMg01no362_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:21 2005CHROMAT_FILE: MSMg01no362_n09.g1 PHD_FILE: MSMg01no362_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTATATAGCACCAGGCTAGTCTTGAATTCACAGAAATTGCATATGGG
GCATCATCAGGCCTGGTGCCTACTGATTTTTGTATGCTAATTTTGTAGCC
TGCCACTTCCCTGGAAGCATTTTTCAGCTCCAATTATTTTCTGGTAGTAT
TTTCGATGTACATAATCTTATTTTTATTTGTATTTTTTCTTCTCCTTTTG
CCGCTCTAGCTAAGACCTCAAGTATATACTGAAAAGGAGTGGAGAGATAG
GATGTCCTCGTCTTGTTTTCTGGTTTTAGTAGAAACACTTATTTTTCCTC
ACTCACCTACAACCTTGTAGGTTGCCTGGATTGTTTCATGCATCCTTAGT
CTCTTGAGGATTTTTTTTTTTTATCATGAAGGGATGTATATTATCACAAG
CCTTTTCTGCATTGATTGAGATGATCTGTCCTTGTTCTCATTTTTGATTG
TAGAGACTTTAAATGTCTTTTCTGCATGAGTCCTGGTTGCATTGTTGTAT
AACTTTAGCCCTTCCTTTTACCCTAAGGTCACATCTATGGTGGTGAAGTA
TGTTTCTTGGATGCAGAAAAAAAGAGAGACCCTCCCTGTTTTATGGCTAA
TCTTCTAGTCTCGTGTCTTTTTTCCCCCCTCAAGACCAGGTAACCTTGGC
TGTCCTGGAACTCACTCCGTAAATCAGACTGACTTTGAGTTTCTAAATTT
GTCTGCN

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGCTCCTGCCTTGAAAGCACAGGTCAC
ATGGGAGGGAAAGCACAGCAGCAAGGACAGTTGTGGCAGCAGGAGGTTGA
GCCACTTCCTTGCATTTTCAAATCAGAAAGCAGAGATAGGACAGGAAGTG
AAGCTGGCCAGTAAGTAAGGAGGCCTGCTCCCAGATACCCACTTCCTCCA
ACTAGGTCCCACATCCTCCCCAAACAGCACAACCTAAGCACAAGCTAAGA
ACTAAGCATTCAAAAACACAAGCATGTTAGGGACAATTGACATCCAAATT
CTGAGTAGGTCATATACAACTTCAGCCCTTGGCTTGCCAGCTTGTGTCCT
GATCTCTCTTAGGTCCCCAGTTTCAGGGTTTCTGCACGTTGTCCACCTTT
ATCTATAGCAAAAGTGGAGCCACAGTTATATTAGCACCACTCTAAAGACA
CTAACTCCTAAACCCTTTATGGGTACNAGAAAGAAAACCAAAAAAGAAGT
ATAAGAAAAGTGCCTTTCTTTCCAGGTCTCTGTGCACATCTGACTCCCAA
AGTCTCAGCATTTCCTTGCTATCCTCTGACATGTTGTCATTGCCCTTGGN
CATGACCACCCTGTTGAACACCAGTTAGAGGGAATTAAAACTAAGCCCAC
CAATTCTTCTTCGGTTGGACCCCCCCGCAAGTATTTGCTGTGCCCCCAAA
TCCTTACTCTCCCTTGCGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_n09.g1 MSMg01no362_n09.g1 CHROMAT_FILE:
MSMg01no362_n09.g1 PHD_FILE: MSMg01no362_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:21 2005
         (503 letters)



>mm_chr16_19966970_19967872
          Length = 903

 Score =  920 bits (476), Expect = 0.0
 Identities = 496/503 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggctcctgccttgaaagcacaggtcacatgggagggaaagcacagcagcaaggacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggctcctgccttgaaagcacaggtcacatgggagggaaagcacagcagcaaggacag 260

                                                                       
Query: 61  ttgtggcagcaggaggttgagccacttccttgcattttcaaatcagaaagcagagatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtggcagcaggaggttgagccacttccttgcattttcaaatcagaaagcagagatagg 320

                                                                       
Query: 121 acaggaagtgaagctggccagtaagtaaggaggcctgctcccagatacccacttcctcca 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 acaggaagtgaagctgggcagtaagtaaggaggcctgctcccagatacccagttcctcca 380

                                                                       
Query: 181 actaggtcccacatcctccccaaacagcacaacctaagcacaagctaagaactaagcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaggtcccacatcctccccaaacagcacaacctaagcacaagctaagaactaagcatt 440

                                                                       
Query: 241 caaaaacacaagcatgttagggacaattgacatccaaattctgagtaggtcatatacaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaaacacaagcatgttagggacaattgacatccaaattctgagtaggtcatatacaac 500

                                                                       
Query: 301 ttcagcccttggcttgccagcttgtgtcctgatctctcttaggtccccagtttcagggtt 360
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcagcccttgacttgccagcatgtgtcctgatctctcttaggtccccagtttcagggtt 560

                                                                       
Query: 361 tctgcacgttgtccacctttatctatagcaaaagtggagccacagttatattagcaccac 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgcacattgtccacctttatctatagcaaaagtggagccacagttatattagcaccac 620

                                                                       
Query: 421 tctaaagacactaactcctaaaccctttatgggtacnagaaagaaaaccaaaaaagaagt 480
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 621 tctaaagacactaactcctaaaccctttatgggtacaagaaagaaaacaaaaaaagaagt 680

                                  
Query: 481 ataagaaaagtgcctttctttcc 503
           |||||||||||||||||||||||
Sbjct: 681 ataagaaaagtgcctttctttcc 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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