BAC Information

Click to search

BAC

Clone NameMSMg01-363C19
Chromosome16 (Build37)
Map Location 85,595,733 - 85,596,295
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994
Downstream geneLOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363C19.T7 (MSMg01no363_c19.b1)MSMg01-363C19.TJ (MSMg01no363_c19.g1)
ACCAG471677AG471678
length781754
length of high quality
(start - end)
567 (33 - 599)448 (79 - 526)
definitionCHROMAT_FILE: MSMg01no363_c19.b1 PHD_FILE: MSMg01no363_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:48 2005CHROMAT_FILE: MSMg01no363_c19.g1 PHD_FILE: MSMg01no363_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATACATT
TACACAATAATCATGATCATCTCTAACCTTTGTTTTCTCCCTCAAACCCA
TTATTATCATGCCCCCTTCCAACTTTATATCCTTTTTTATGTTGATAGCT
CTTAAATCCATTAATTAGTACTACCCATATGCAATGGGTATGGAGCCATC
CACTGAAGCTGGGGTGGAAGAATCAGTCTTCTATGATAGGCTATATCTTT
AAAGAACATTTTGTTAGGCAATCATGACCTCATCTGATAAAAACAACAGG
CTTCAGAGTGCTTTGTCTGATCAATTTTGTATTTATATTCTGTGCAATTG
TGCTTCTGCACACAAAATCATGTGGCAATCATTGCTGAAGCTAACAGAAT
GCTAATGGCATGGACGTGATTCAGGTCACTGCTAAAATATTAGCAGGAAG
CGTTAAGCTGAATGCCAAATCCTGGCAATGTTCTATGCTTACGGACCTTG
TTACTTTTAAGATCTCAAAACAAATTCGTAAAGCAGAAGGCATGCATGCG
TTTCCCTCTGTCTCAGTGTTAGGTTTCCAGTCCCATTCATTTGACTTGTG
NCTTCCCAGCTGGTCATGCCATTCTTCAGGGCAGTAAGAGTCAAGATGAT
TTCTTATTTGTCTGAATGCTCCCAAATCATAAAGCTTAAAAAGTCCTAAG
AATCCTAATACTTTCCCCGCTATTGATTTTACATGAAGTTTTGTCGCGCT
TTCCTGGATGTAGTCTCAAAAAAGCGCCTTN
NNTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATC
ATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGG
GTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGT
GGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGG
CAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCT
CTGTTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTT
CTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCT
CAGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGG
TGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGG
AAGGTGGCCAGTTGTCTGGAGTCGAAGATGTTGCAGCCTCATAAGCTCTG
TGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGATGATGGTGCCG
CCCCATAATCTCTGCGACTCTCTCGCCCGTCCCTGAAATTGCTTGGCACT
CTGTTTTCCACATGGTCACTCGTGTAGCCTGCCCTCCCGGGATTTTCTGA
TTCCAGATTGTTTCCCTCCGGCTTTCGCGCCCTCTTATCTTCTCCGGCCA
TGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_c19.b1 MSMg01no363_c19.b1 CHROMAT_FILE:
MSMg01no363_c19.b1 PHD_FILE: MSMg01no363_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:48 2005
         (567 letters)



>mm_chr16_85595529_85596495
          Length = 967

 Score = 1050 bits (543), Expect = 0.0
 Identities = 558/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatacatttacacaataatcatgatcatctctaacctttgttttctccctcaaa 64
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatacatttacaaaataatcgtgatcatctctaacctttgttttctccctcaaa 264

                                                                       
Query: 65  cccattattatcatgcccccttccaactttatatccttttttatgttgatagctcttaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccattattatcatgcccccttccaactttatatccttttttatgttgatagctcttaaa 324

                                                                       
Query: 125 tccattaattagtactacccatatgcaatgggtatggagccatccactgaagctggggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccattaattagtactacccatatgcaatgggtatggagccatccactgaagctggggtg 384

                                                                       
Query: 185 gaagaatcagtcttctatgataggctatatctttaaagaacattttgttaggcaatcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagaatcagtcttctatgataggctatatctttaaagaacattttgttaggcaatcatg 444

                                                                       
Query: 245 acctcatctgataaaaacaacaggcttcagagtgctttgtctgatcaattttgtatttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctcatctgataaaaacaacaggcttcagagtgctttgtctgatcaattttgtatttat 504

                                                                       
Query: 305 attctgtgcaattgtgcttctgcacacaaaatcatgtggcaatcattgctgaagctaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attctgtgcaattgtgcttctgcacacaaaatcatgtggcaatcattgctgaagctaaca 564

                                                                       
Query: 365 gaatgctaatggcatggacgtgattcaggtcactgctaaaatattagcaggaagcgttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaatgctaatggcatggacgtgattcaggtcactgctaaaatattagcaggaagcgttaa 624

                                                                       
Query: 425 gctgaatgccaaatcctggcaatgttctatgcttacggaccttgttacttttaagatctc 484
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 gctgaatgccaaatcctggcgatgttctatgcttgcggaccttgttacttttaagatctc 684

                                                                       
Query: 485 aaaacaaattcgtaaagcagaaggcatgcatgcgtttccctctgtctcagtgttaggttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 aaaacaaattcgtaaagcagaaggcatgcatgcgtttccctctgtctcagtcttaggttt 744

                                  
Query: 545 ccagtcccattcatttgacttgt 567
           |||||||||||||||||||||||
Sbjct: 745 ccagtcccattcatttgacttgt 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)