Query= MSMg01no363_d03.b1 MSMg01no363_d03.b1 CHROMAT_FILE:
MSMg01no363_d03.b1 PHD_FILE: MSMg01no363_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:50 2005
(562 letters)
>mm_chr16_79742399_79743359
Length = 961
Score = 1006 bits (520), Expect = 0.0
Identities = 547/558 (98%), Gaps = 5/558 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaagtgaggacaaaatttctgactaactttgcagatttaccctgtctacctat 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaagtgaggagaaaatttctgactaactttgcagatttaccctgtctacctat 264
Query: 65 aaatggtttgaggccaacatccccttttcagctgacctttgaaagcctatactcagaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatggtttgaggccaacatccccttttcagctgacctttgaaagcctatactcagaaaa 324
Query: 125 gcattgcagtggccttttgggttattaagaattcatgccaattgaaatcttgcataatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcattgcagtggccttttgggttattaagaattcatgccaattgaaatcttgcataatga 384
Query: 185 gcagtgttttaaaagtctgaatattttccctttccaaacaaggttacctagtttatgatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagtgttttaaaagtctgaatattttccctttccaaacaaggttacctagtttatgatc 444
Query: 245 acaaatccccttgacaacaatctgaaaaaaaaattctattacgtaactaccataatttct 304
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 acaaatccctttgacaacaatctgaaaaaaaa-ttctattacgtaactaccataatttct 503
Query: 305 cttgcatatttctatattgaatgcatttcatcttgattatgtcaagagtctactttccat 364
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 504 cttgcatatttctatattgaatgcattgcattttgattatgtcaagagtctactttccat 563
Query: 365 ggtacacaaactttccttcatccctggttcataacttagattcacttttgaagctcttga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtacacaaactttccttcatccctggttcataacttagattcacttttgaagctcttga 623
Query: 425 tgtttattctcagaggtttgtttgtttgtttgtttgttttttgttttttcccagtgtgtg 484
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 tgtttattctcagaggtttgtttgtttgtttgttt----tttgttttttcccagtgtgtg 679
Query: 485 tatcctgcctgggtgtattttattttccaacttcaatgtacattgccgacttattgcttg 544
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 680 tatcctgcctgggtgtattttattttccaacttcaatgtacattgcagacttattgcatg 739
Query: 545 atttattttattttcatc 562
||||||||||||||||||
Sbjct: 740 atttattttattttcatc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space: 524952
Effective search space used: 524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_d03.g1 MSMg01no363_d03.g1 CHROMAT_FILE:
MSMg01no363_d03.g1 PHD_FILE: MSMg01no363_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:50 2005
(246 letters)
>mm_chr1_19268535_19269179
Length = 645
Score = 281 bits (145), Expect = 4e-80
Identities = 222/248 (89%), Gaps = 5/248 (2%)
Strand = Plus / Minus
Query: 1 tttaaaagctacaattttgatattgcttcatcattgaatatttcattttaagttantctt 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 445 tttaaaagctacaattttgatactgcttcatcattgaatatttcattttaagtt-gtctt 387
Query: 61 gtaataatgattgttcctacagctatgggcattttggattcttgtaaagacgcaatgctt 120
| |||||||||| |||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct: 386 ggaataatgattattcctacagctacggacattttggattcttgtaaagatgcaatgctt 327
Query: 121 atatgtgacataattntacaaatgggcattcagtgacagttaagcgcttttatc-ttgta 179
||||||||||||||| |||||||| || |||| | | ||||||| |||||| || |||||
Sbjct: 326 atatgtgacataatt-tacaaatgagccttcaataaaagttaagtgctttt-tctttgta 269
Query: 180 agatacataaattgaattggtaagttttgtgtttgtaactt-tttaatgaattaatatac 238
| |||| | || ||||||||||| ||||||||||| ||||| || |||||||||||||||
Sbjct: 268 atatacctgaactgaattggtaaattttgtgtttgaaacttattaaatgaattaatatac 209
Query: 239 aataaaaa 246
| ||||||
Sbjct: 208 agtaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space: 150732
Effective search space used: 150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
