BAC Information

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BAC

Clone NameMSMg01-363J15
Chromosome16 (Build37)
Map Location 9,133,954 - 9,134,535
singlet/doubletsinglet
Overlap genenone
Upstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneGrin2a, LOC665291, LOC100042534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363J15.T7 (MSMg01no363_j15.b1)MSMg01-363J15.TJ (MSMg01no363_j15.g1)
ACCAG472000AG472001
length7591,139
length of high quality
(start - end)
618 (60 - 677)---
definitionCHROMAT_FILE: MSMg01no363_j15.b1 PHD_FILE: MSMg01no363_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:22 2005CHROMAT_FILE: MSMg01no363_j15.g1 PHD_FILE: MSMg01no363_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCANA
ATTATCCGAGAAATATCAGTCTACAGATCCAAAATGGTCAGCAAACACTA
GGTAGGGAAAGTACACTGAAAATTACATCCAGAGACCTGGGCATGGTGGT
GCTCATCTAAAATCCCAGCACTCAGAAGACTAAAACAAGAAGGTCGTTAG
TTCAAGGCCAACCTGAACTACACAATGAAAACTCTTCTAAAATACTAAGA
TGCTTTTAAAATGATGATGATGATGATGACAATAATGGTGATAATATTAA
CAATTATCATATTATGATAATCTAATAATTATCATTATTAGATGTAGATT
TTTAAAATTCATACACAGATGCATGACATTTATCTTATTAAAAACTAAAT
ATGGGGTACCTTTAAGTCAGGGGAGAACAATACCATACATTTAGAGATGC
AGAGGAAACCCCTAAGAGTTCCACCAAGTACTAATTGGGGCACTGAGGGA
AAAGAGCCATGTAATAAGATTAGAGGGAATGCTAGCTGGAGAACACACAG
GAGCAGAGATGTCCAACATTCAGAAAAAATTTGAAACACATGGTGCTTAA
ACTACATCCCTGACTGTACATTAAAGTAAAAGTTAGGGGGAATGTAATGC
TATCTCTAGTTCAAAAAAATGCTAGGGTGAGGAAGATATACTAACCCTGA
CCAAAAAGATCTAGGGTAAAATATCCATCCTGTGAGAGCACAGATAAAAG
GATGCTGTN
TTCCCTACTGGTGTGGCGCTGTAGCGAAAGAAACNAATAGGATCTCCTTA
ACTGTGTGGTGTGCCCTTCTGCGTTTCTCCCCCTGATGAGGGCACGCTCG
AGTCCTCCTGTCGCTTATCAGACAGACGTCATTGAGACTTGTCCTCGAGA
CCGGCGTATGTACTTATGTTCACACTGTCAGTCAGTTGTTGTTTCTTGTT
GTTAACAACATAGAACTTGTTTTTACTTATGAGCAGCGCCTACGTGGTCG
TTGTCTCCACCTCACTCGTCACCATATGTCACGTTCGCACCTTCAATACG
TACAAAAAGAGAGGACACAAATAGCTCGATGTGACGAGCCCGCAGGAAGA
TCCATAGAGAGATGANTAGCGCTACNGCACTAATTACTCGGTTCTTCTCG
GAAGTGATGTCTTATGTGCTTGGTAATACGGATAGTGACGGACCGACAGC
ATACGATTTGTCCTTGCGTCGTCCATGTGGGCGCCAGCGCCCGGACGCCC
TTATCACCTCGGCCAGGTCTCAGATATCTAACCAGTGTTGTAGCATTACT
ATCGACGGTGTTGTGTCCCTTACACTTTTAACACATCCTTGTCACGTCTG
AAAGATGACCAGCACCGTGGTGATTACCGCCTCTACCTTATACTCAGAAA
GCCGTGTGAACGCGTCTTGTGTGTAAAGAGACGCGATCGTGCATCTTACC
ATAGATTGAGAGTAAGAGTCCTTCGCACGGTACTACGCGTAATCTCGCAG
ACTTATACCTTCGACAGGAGTTGACTTTGACGCAGCCGCCCTCACATTTG
TTCACAGATATGGCGTGACACCAGACCGCTAGTACTCTTAATGATCTGTC
TCTAGATCATATTCGTGATCTCCAACGCAGACGCTCAAATAAAACTACAC
TCGCTCATAATGATATGCGAAGCACGTGATGAATGCAGCAGAGCCACTGC
GGCGACATGCGTGTTTTGTTCGTGCACATCCGTTGCTGTTTCTCACCCTT
ATATGGTCGCTGTGCAGCGTTTGTACACTCGGTATCGATGTTGTGTGAAT
CGCTGTGTGGCGCGACGCGTATTGTGGCGATGCTCATCGTCAGCCGTTCT
CGTGGTGTACGCGTAGAATAAGAAGAGAGTNAGTGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_j15.b1 MSMg01no363_j15.b1 CHROMAT_FILE:
MSMg01no363_j15.b1 PHD_FILE: MSMg01no363_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:22 2005
         (618 letters)



>mm_chr16_9133518_9134535
          Length = 1018

 Score = 1071 bits (554), Expect = 0.0
 Identities = 575/582 (98%)
 Strand = Plus / Minus

                                                                        
Query: 37   cactaggtagggaaagtacactgaaaattacatccagagacctgggcatggtggtgctca 96
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 cactaggtagggaaagtatactgaaaattacatccagagacctgggcatggtggtgctca 959

                                                                        
Query: 97   tctaaaatcccagcactcagaagactaaaacaagaaggtcgttagttcaaggccaacctg 156
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 958  tctaaaatcccagcactcagaaggctaaaacaagaaggtcgttagttcaaggccaacctg 899

                                                                        
Query: 157  aactacacaatgaaaactcttctaaaatactaagatgcttttaaaatgatgatgatgatg 216
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 898  aactacacaatgaaaactcttctaaaatactaagacgcttttaaaatgatgatgatgata 839

                                                                        
Query: 217  atgacaataatggtgataatattaacaattatcatattatgataatctaataattatcat 276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  atgacaataatggtgataatattaacaattatcatattatgataatctaataattatcat 779

                                                                        
Query: 277  tattagatgtagatttttaaaattcatacacagatgcatgacatttatcttattaaaaac 336
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  tattagatgtagattttttaaattcatacacagatgcatgacatttatcttattaaaaac 719

                                                                        
Query: 337  taaatatggggtacctttaagtcaggggagaacaataccatacatttagagatgcagagg 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  taaatatggggtacctttaagtcaggggagaacaataccatacatttagagatgcagagg 659

                                                                        
Query: 397  aaacccctaagagttccaccaagtactaattggggcactgagggaaaagagccatgtaat 456
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658  gaacccctaagagttccaccaagtactaattggggcactgagggaaaagagccatgtaat 599

                                                                        
Query: 457  aagattagagggaatgctagctggagaacacacaggagcagagatgtccaacattcagaa 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598  aagattagagggaatgctagctggagaacacacaggagcagagatgtccaacattcagaa 539

                                                                        
Query: 517  aaaatttgaaacacatggtgcttaaactacatccctgactgtacattaaagtaaaagtta 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538  aaaatttgaaacacatggtgcttaaactacatccctgactgtacattaaagtaaaagtta 479

                                                      
Query: 577  gggggaatgtaatgctatctctagttcaaaaaaatgctaggg 618
            |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 478  gggggaatgtaatgctatctctagttcaaaaaaatgataggg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)