Query= MSMg01no363_j16.b1 MSMg01no363_j16.b1 CHROMAT_FILE:
MSMg01no363_j16.b1 PHD_FILE: MSMg01no363_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:22 2005
(551 letters)
>mm_chr16_57981585_57982540
Length = 956
Score = 949 bits (491), Expect = 0.0
Identities = 523/535 (97%), Gaps = 5/535 (0%)
Strand = Plus / Plus
Query: 1 ttacgccctttcctaaa-ttccttctgttatttcttggtctgcctgttttgaattttgtc 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacgccctttcctaaaattccttctgttatttcttggtctgcctgttttgaattttgtc 260
Query: 60 tctgtagtgacagcagtaggttctccaaagagtcctcattagtaccatgctttctccctg 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtagtgacagcagtagattctccaaagagtcctcattagtaccatgctttctccctg 320
Query: 120 tagatttctggtaagttagcctccctttttt-gttatttatgaggtgacaactggcccca 178
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tagacttctggtaagttagcctccctttttttgttatttatgaggtgacaactggcccca 380
Query: 179 gaagactacatatcctttcttcacaaacaccttgaaaacaaaacaaagagaa---ttgca 235
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gaagactacatatcctttcttcacaaacaccttgaaaacaaaacaaagagaagaattgca 440
Query: 236 agccagtcctgaaaagcacattgttctctgtgttatttggtcaagtcatctgagcatgtg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccagtcctgaaaagcacattgttctctgtgttatttggtcaagtcatctgagcatgtg 500
Query: 296 gtaaaggaattaacttaatagcaactgttggttttcctaataaagcaaagcaaaggtgac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaaaggaattaacttaatagcaactgttggttttcctaataaagcaaagcaaaggtgac 560
Query: 356 tgcaggtttagttaaacaaatgtcagtggtgttcctaatagatttaacataaacattttg 415
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaggtttagttaaacaaatgtccgtggtgttcctaatagatttaacataaacattttg 620
Query: 416 ctcttttaggatgtgtattttaacaaaaagcactatgatgcatttcatctttgcttcgac 475
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacttttaggatgtgtattttaacaaaaagcactatgatgcatttcatctttgcttcgac 680
Query: 476 tcctttctaaggctgcacacacacacacacacacacacacacacaaacacgcaca 530
||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||
Sbjct: 681 tcctttctaaggctgcacaaacacacacacacacacacacacacacacacacaca 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 956
Length adjustment: 10
Effective length of query: 541
Effective length of database: 946
Effective search space: 511786
Effective search space used: 511786
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_j16.g1 MSMg01no363_j16.g1 CHROMAT_FILE:
MSMg01no363_j16.g1 PHD_FILE: MSMg01no363_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:22 2005
(448 letters)
>mm_chr16_58155176_58156022
Length = 847
Score = 806 bits (417), Expect = 0.0
Identities = 438/445 (98%), Gaps = 1/445 (0%)
Strand = Plus / Minus
Query: 4 aaaatccagtcttcattatctgaactcttttgggggagcaatgcctcttgttcctctccc 63
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 525 aaaatccagtcctcattatctgaactcgtttgggggagcaatgcctcttgttcctctccc 466
Query: 64 agcctctagccctttaagtcactaagggagcagtttaaaaacagtgaaatacacagcagg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agcctctagccctttaagtcactaagggagcagtttaaaaacagtgaaatacacagcagg 406
Query: 124 aaggtatttgcaactgtaagactctggcctttaccaagactcaggaggttgatcagaatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaggtatttgcaactgtaagactctggcctttaccaagactcaggaggttgatcagaatt 346
Query: 184 ctgtcatgagaatctgtgcctgtagccgagtcaaaacaaaatatttctgatgattttgct 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctgtcatgagaatctgtgcctgtagccgagtcaaaacaaaatatttctgatgattttgc- 287
Query: 244 ctgtttaaaaatacagagaattaacagtgagaatgattagtggggtgaggactaggttag 303
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cgggggaaaaatacagagaattaacagtgagaatgattagtggggtgaggactaggttag 227
Query: 304 ctaagtaaaggtcaccagatggattgctgttgttttattgttgttgttgttgttataata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ctaagtaaaggtcaccagatggattgctgttgttttattgttgttgttgttgttataata 167
Query: 364 ataataattattaaaatgactcctagagaaaatgtgagctaattccctaactgattgtta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ataataattattaaaatgactcctagagaaaatgtgagctaattccctaactgattgtta 107
Query: 424 attaccagcagaatttgatttagag 448
|||||||||||||||||||||||||
Sbjct: 106 attaccagcagaatttgatttagag 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space: 366606
Effective search space used: 366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
