BAC Information

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BAC

Clone NameMSMg01-365A10
Chromosome16 (Build37)
Map Location 51,672,501 - 51,673,003
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672778, 5330426P16Rik, EG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365A10.T7 (MSMg01no365_a10.b1)MSMg01-365A10.TJ (MSMg01no365_a10.g1)
ACCAG473081AG473082
length756737
length of high quality
(start - end)
503 (43 - 545)502 (58 - 559)
definitionCHROMAT_FILE: MSMg01no365_a10.b1 PHD_FILE: MSMg01no365_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:25 2005CHROMAT_FILE: MSMg01no365_a10.g1 PHD_FILE: MSMg01no365_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGATTACCGTTGCCTATTCAGTGACATTCAGAATAGCCTCTGGTACT
ACACTATCACTTAGAATAAAAGCCAAGTCGCTCTCATATACAGGAATTTA
CAATGGTTTAGGAAGTAGATCAGGATGTTGTTTTAGAATATTGCATTATT
CATGAGATGGTTAGCTAGAATGGAACTCCCAAGTTAAAACCATGACTTGG
GTGTGAAAGCCCTTGCCCTAGGAGAGTAAAGACCTCACACCTGGCTTCTA
AGACTATAGCTGAGTTACACCCAGACACACACGTATTTACAATGGCCTAA
GGGGAAGGTGGACTATACAATAGACTAAAATAGGAACTATGGCAAGGGCA
CGAAGCCCTTGAACCTGGCTTCTAAGATTAAGTGAATCTTAGGTGGAGCC
CTTTTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTGT
TAGACTTTCTGTGTTTGCATTTCTCTGTTTTATGTAAGAATCCAGTAACC
TCTTTGTACCTTGCGGGTATGTCACCCAACTTCCTTATTGGTTTCTGCAT
AAAAAGTCTGATGCCCCGACTTGACATTTCCTTCCGATCTCATATAATTT
TTCCCGTGTGCATTTGGCTGCCAAATTTATCTTGATGCTTTGCCCCCTTG
TGCATTACACCCCTTTCCTACCATAACTATGGTTGCCTTAATGGTCTTGC
GCTTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTACATTTAAGAGATATAAAAGTTACAAAATGTTCAGTAAAA
ACACTGTGACAAATTTTTTTGGTTCAAAGTTTTCATCTTCCTCTTCTGTC
TTTGAATCATGAAGAAACCTGTTTTAATAATTCCTTTTAGTAGTTTCTCT
AATATCTAGAAATAATTAAGCTAAGCACACTTACTTAATTTTTTATTTTT
CCTTGGTTCCCTCTTACTTGAAAGAAATAATCAAAGAAGAATCCACAGGA
AATAAACAACTATGAGAATCATTATGAATTACTTCTTTAATTCACTATAC
ATCAGCTCTCACAGGTACCACTTACTGCACTGACATTTCTGTCCTATAAT
AATAATTGATACTCAGTTTTGCCAGTTCAGGGTCTGCCTATGTTTTGGAG
AAATGGTATTGAACCAATTTGAAGTCTTTATTAATAAATTTATTTTGATC
TCCTCTCCATTTCTCTTTATTGATTTCATACATTTGTATAATTTTAGAAA
TTAAATTTGCCCATGACCTTAAAGAATGTGTAGGTCATCTTATCAAAGTA
ATGAATGACAGCATCAGCCCTGCAGTTACAATCTGCTGTTGGCCCACTAA
CTAAACCCTCTACGGTAAGCTCCCTACAAAATCTAACTACTGCCTTATTT
AAAATCAGCGCCTAGGAAATAATTAAAAATGCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_a10.g1 MSMg01no365_a10.g1 CHROMAT_FILE:
MSMg01no365_a10.g1 PHD_FILE: MSMg01no365_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:25 2005
         (502 letters)



>mm_chr16_51672301_51673203
          Length = 903

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%), Gaps = 1/503 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacatttaagagatataaaagttacaaaatgttcagtaaaaacactgtgacaaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacatttaagagatataaaagttacaaaatgttcagtaaaaacactgtgacaaatttt 260

                                                                       
Query: 61  tttggttcaaagttttcatcttcctcttctgtctttgaatcatgaagaaacctgttttaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 261 tttggttcaaagttttcatcttcctcttctgtcttcgaatcatgaagaaacctattttaa 320

                                                                       
Query: 121 taattccttttagtagtttctctaatatctagaaataattaagctaagcacacttactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattccttttagtagtttctctaatatctagaaataattaagctaagcacacttactta 380

                                                                       
Query: 181 atttttt-atttttccttggttccctcttacttgaaagaaataatcaaagaagaatccac 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttttatttttccttggttccctcttacttgaaagaaataatcaaagaagaatccac 440

                                                                       
Query: 240 aggaaataaacaactatgagaatcattatgaattacttctttaattcactatacatcagc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaaataaacaactatgagaatcattatgaattacttctttaattcactatacatcagc 500

                                                                       
Query: 300 tctcacaggtaccacttactgcactgacatttctgtcctataataataattgatactcag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcacaggtaccacttactgcactgacatttctgtcctataataataattgatactcag 560

                                                                       
Query: 360 ttttgccagttcagggtctgcctatgttttggagaaatggtattgaaccaatttgaagtc 419
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 ttttgccagttcagggtctgcctatgttttggaaaaatggtattgaaccaatttgaagtc 620

                                                                       
Query: 420 tttattaataaatttattttgatctcctctccatttctctttattgatttcatacatttg 479
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 tttattaataaatttattttgatctcctctccatttctttttattgatttcatacatttg 680

                                  
Query: 480 tataattttagaaattaaatttg 502
           |||||||||||||||||||||||
Sbjct: 681 tataattttagaaattaaatttg 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space:   439356
Effective search space used:   439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)