BAC Information

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BAC

Clone NameMSMg01-365O11
Chromosome16 (Build37)
Map Location 42,540,993 - 42,541,233
singlet/doubletsinglet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365O11.T7 (MSMg01no365_o11.b1)MSMg01-365O11.TJ (MSMg01no365_o11.g1)
ACCAG473747AG473748
length863717
length of high quality
(start - end)
---245 (52 - 296)
definitionCHROMAT_FILE: MSMg01no365_o11.b1 PHD_FILE: MSMg01no365_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:32 2005CHROMAT_FILE: MSMg01no365_o11.g1 PHD_FILE: MSMg01no365_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTC
TTTTTGCGCGTGCGAGGGGGGGGGGATATTTCCCGCTCAGTCCCGCGTAA
ATAGGTGAGAGGGGGGACCGCGCAGCCCGCTCGTTGGGCTTTCTAGATCC
GGCGCCGCTCCGCAACGCATAGGACCCTTTTTCCCCCCTCATTAACGACA
ACACTCGCATTTATGTGGCATGCGGCGTGGCTTATTACCTTTTTGTTTTC
CTTTACTGGTCCCTACCACTGATCTAATAGCTATTTCGACACTACTTACC
GCTCTCCCATTACCTATCCTCGCTCTATTGCGCTTGTGTTCTTACTCCGC
CCTCTTCTTGTCCTTTTCCTTTGTAGGCGGCCGTTGCGGGCAGGTCGTTT
GGCCGTGCGGGTCTTCGCGACATTCACCGGGTCGCGGAGCCGCAGACTAA
GCCAGGAGTCATATTATAAAGCGCCGCTCATCCACACGTATTAGCGTCCC
ACAAGTACGCGCGTCACTCAGTCCAGTCCGTTCGCTGTTGTACCGGTGGA
AAGCCGGATTCCTTCACATAATACGCGTCCCACCCGTTCGCTAATTCATT
CTATACTTATTCCGCCGTCCACCCGCGGGCCTTTTTTCGGTACCCGTGTT
TCCTGTTTTCGTCGCGCCGGTTTTCGGTGGGATAGCTGTTACGCGCCGTT
CGCGGGGGGAGTTTTTATTTTCCTGGGCTCTCGGGGTTATCGCCTGAGTT
CTCCGGCGCGCGTTTTCGTGTGCTCCGCCCTTTTTTACCGTGTGTTGCGC
GGGATTTTCATATTCGTAGATAGATAGCCGGCGGGCGAGAGTGCGCGGGA
TGTTATGTGAGAG
TGGCGGCCGCCTTTTTCAAAAXXXXXXXXXXXXXXXXXXXXTGTCTAAAA
GAATTCTCCTAATGAGNAATTGGCAAAGTTTGTTGCCAACACCATATGAG
TGTTACTTATTTGATTTCTCATTCATTCAATTTATTGAATAGTTTTATTT
CTTAGAGTCCATGCTCTATAAGCCAAGTATTGTAAAAATGAATGAATGAA
TGAATGAATAAACAAATAAGTAAATACTATAGGTGAGAGAGCTTGAGTAA
ATGGCCTTTACAAAGTGATTCTAGAGGAAAAGAGACAGGCAGCCTTGGTC
NATCTGACGGAGAACATTCCAGGCAGAGAGAACAATTGTTGTGTCCCTGA
AATAAAGATATTGCCACATATGTCTTGATTAGTGCGTATAGTAACACCAC
ACACTGAGAAATTTAAAGACATAGAACTTTACTTCTTTTAATTTTGAGAC
CAGAAGTTAAGTTAAAGAATTGGCAACATCAGGGTCTGGGGAATCTGCTT
TTCTCCCAGGACTGACCATCCTTTGGGGTCCTTCAGAGGAGATGGATGCC
ACATCCAAACGTGGACACTACAGGGCTTGTAGTAGAGTTTTACTTCTGTG
AGCAGGCACCATGACTAAGGTTTTGTTTATATGAACAACATTCAATTGGG
GCTGTCTTACAGTTCTGAAGTTCTGTCCCATATCATTAAGGTGGGATCAT
GGTTATTTCAATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_o11.g1 MSMg01no365_o11.g1 CHROMAT_FILE:
MSMg01no365_o11.g1 PHD_FILE: MSMg01no365_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:32 2005
         (245 letters)



>mm_chr16_42540899_42541543
          Length = 645

 Score =  433 bits (224), Expect = e-126
 Identities = 238/245 (97%), Gaps = 4/245 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctcctaatgagnaattggcaaagtttgttgccaacaccatatgagtgttacttatt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aattctcctaatgagtaattggcaaagtttgttgccaacaccatatgagtgttacttatt 276

                                                                       
Query: 61  tgatttctcattcattcaatttattgaatagttttatttcttagagtccatgctctataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgatttctcattcattcaatttattgaatagttttatttcttagagtccatgctctataa 216

                                                                       
Query: 121 gccaagtattgtaaaaatgaatgaatgaatgaatgaataaacaaataagtaaatactata 180
           ||||||||||||||||||||||||||||||||||    |||||||||||||||||| | |
Sbjct: 215 gccaagtattgtaaaaatgaatgaatgaatgaat----aaacaaataagtaaatacaaga 160

                                                                       
Query: 181 ggtgagagagcttgagtaaatggcctttacaaagtgattctagaggaaaagagacaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggtgagagagcttgagtaaatggcctttacaaagtgattctagaggaaaagagacaggca 100

                
Query: 241 gcctt 245
           |||||
Sbjct: 99  gcctt 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)