BAC Information

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BAC

Clone NameMSMg01-366D23
Chromosome16 (Build37)
Map Location 17,005,381 - 17,187,759
singlet/doubletdoublet
Overlap geneMapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3
Upstream gene2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519
Downstream geneGm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366D23.T7 (MSMg01no366_d23.b1)MSMg01-366D23.TJ (MSMg01no366_d23.g1)
ACCAG474007AG474008
length780774
length of high quality
(start - end)		455 (49 - 503)385 (76 - 460)
definitionCHROMAT_FILE: MSMg01no366_d23.b1 PHD_FILE: MSMg01no366_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:02 2005CHROMAT_FILE: MSMg01no366_d23.g1 PHD_FILE: MSMg01no366_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,187,311 - 17,187,759)(17,005,381 - 17,005,765)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTGATTTGTCCTTCTCTGAGATTTGCTTTCTTTCTATAGAG
TGGCACATTTGTGCCTGCCTTGCTCTCAATCTGGGGTGTAAGTCTCTGAT
CACATCTTATGTGCTGTATATCATCAACAGTGTGAGGAGTGTCGTCATGA
CTGGCCATCTCTACCCTGTCTGCCTTTTCCTTGGCATGTGTTTCTAATTG
TTATTGAAATCTTGGATGATCTTCTGAACTGATGCCGTTGATAGATAAAT
ATGGTTTTAATGAGATTTTAACCAGAACCATGCCTTATGTTTCAGTTCAT
TTCAGAAAGCTTTGTGTTAATAACTATAAACACCCTCAGTTTCCTCTGTC
ACATTATAGACAGTAAAAAAATCTACATTGTTGTATTTTAGATTTTTAAG
AAACAGGATACGCCGGGCATGGTGGTGCAGGCCTTTTAATTCCAGTACTC
ATGAGGCAGAGGCAGGTGGATTTCTGCGTTCAAGGGCAGCCTGGTCTACA
GAGTGAGTTTCCAGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAT
AAACCCAAAGAAAAACAATTTAAAGAAACCTTATATAGGTTTGGTCCCGT
TTTTTTTTTTTTTTTTTTCCCCCTTTTCCCCTTTTTGCTTCCGAAAAAAA
AATATGTGGTGGCCCGGCTGTCTTTCATCCCCATTATACCACCTCTCCCC
CAAATCAAAAAAACACCCCCCCCCCTTTTC

NTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAATGTAGAACAGGCCAGCCTTGA
ACTCAGAGATCTACCTACCTCTACCTCTACTGGGATTCAAGTTGTGCACC
ACCATCACTGGTTAAACTTTACTCTTTTCATGTAATAGTCTTAGGATTCA
TTCCCTATTGGTTATTAGAGCTCTTAATCATTCTTTGGGTTTGGTGGGTT
ATTTTTGTTACTGTTTGTTTGTTTGTTTTTTGAAACAAGGGTATCACTGT
AGAGCCCAGACTGCTGGGTAATCCTTCTGTCTGTACCTCCCAAATGCTGG
AATTAGAAACATGCACCACCACACCTGTCTTCTTCATTCATTTATCAGCT
GCAGGGTATGCCATACAGGGTATGCCCTCTGCCCAGTGAACATTTAGGTA
GTGTATTAGTTAGGGTTCTCTAGAGAAACAGACCCGATAGAATGACAATC
TATCCGTTAAATGGGGGGTTTATTAGCTTATTAAAATGATTTGGCCTGAA
TAATCCAACAATGCTTGTTTCCCATGGAAAGTCTCAAAATTCAATATTGT
TTCGTCCCAGAAGATTGCACTCTTAAAAATATTCTTATTTATTTCATGAC
CTTAATAGTGGGTTTCCCATCTCTTTAATATACCCCTTCCCCTCTTCCTT
ATTGCTTTTATCTTACGCAGCGAGATTTTTCCATTTACAGCACTTTTTTT
TTTTTTCCTTAAATACTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_d23.b1 MSMg01no366_d23.b1 CHROMAT_FILE:
MSMg01no366_d23.b1 PHD_FILE: MSMg01no366_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:02 2005
         (455 letters)



>mm_chr16_17187107_17187961
          Length = 855

 Score =  845 bits (437), Expect = 0.0
 Identities = 446/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgatttgtccttctctgagatttgctttctttctatagagtggcacatttgt 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaattctgtgatttgggcttctctgagatttgctttctttctatagagtggcacatttgt 594

                                                                       
Query: 65  gcctgccttgctctcaatctggggtgtaagtctctgatcacatcttatgtgctgtatatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gcctgccttgctctcaatctggggtgtaagtctctgatcacatcttatgtgctgtatatc 534

                                                                       
Query: 125 atcaacagtgtgaggagtgtcgtcatgactggccatctctaccctgtctgccttttcctt 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtcaacagtgtgaggagtgtcgtcatgactggccatctctaccctgtctgccttttcctt 474

                                                                       
Query: 185 ggcatgtgtttctaattgttattgaaatcttggatgatcttctgaactgatgccgttgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggcatgtgtttctaattgttattgaaatcttggatgatcttctgaactgatgccgttgat 414

                                                                       
Query: 245 agataaatatggttttaatgagattttaaccagaaccatgccttatgtttcagttcattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agataaatatggttttaatgagattttaaccagaaccatgccttatgtttcagttcattt 354

                                                                       
Query: 305 cagaaagctttgtgttaataactataaacaccctcagtttcctctgtcacattatagaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cagaaagctttgtgttaataactataaacaccctcagtttcctctgtcacattatagaca 294

                                                                       
Query: 365 gtaaaaaaatctacattgttgtattttagatttttaagaaacaggatacgccgggcatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtaaaaaaatctacattgttgtattttagatttttaagaaacaggatacgccgggcatgg 234

                                        
Query: 425 tggtgcaggccttttaattccagtactca 453
           |||||||||||||||||||||||||||||
Sbjct: 233 tggtgcaggccttttaattccagtactca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_d23.g1 MSMg01no366_d23.g1 CHROMAT_FILE:
MSMg01no366_d23.g1 PHD_FILE: MSMg01no366_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:02 2005
         (385 letters)



>mm_chr16_17005181_17005965
          Length = 785

 Score =  729 bits (377), Expect = 0.0
 Identities = 383/385 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaatgtagaacaggccagccttgaactcagagatctacctacctctacctctactggga 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 acaatgtagaacaggccagccttgaactcagagatctacctatctctacctctactggga 260

                                                                       
Query: 61  ttcaagttgtgcaccaccatcactggttaaactttactcttttcatgtaatagtcttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaagttgtgcaccaccatcactggttaaactttactcttttcatgtaatagtcttagg 320

                                                                       
Query: 121 attcattccctattggttattagagctcttaatcattctttgggtttggtgggttatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcattccctattggttattagagctcttaatcattctttgggtttggtgggttatttt 380

                                                                       
Query: 181 tgttactgtttgtttgtttgttttttgaaacaagggtatcactgtagagcccagactgct 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttattgtttgtttgtttgttttttgaaacaagggtatcactgtagagcccagactgct 440

                                                                       
Query: 241 gggtaatccttctgtctgtacctcccaaatgctggaattagaaacatgcaccaccacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtaatccttctgtctgtacctcccaaatgctggaattagaaacatgcaccaccacacc 500

                                                                       
Query: 301 tgtcttcttcattcatttatcagctgcagggtatgccatacagggtatgccctctgccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcttcttcattcatttatcagctgcagggtatgccatacagggtatgccctctgccca 560

                                    
Query: 361 gtgaacatttaggtagtgtattagt 385
           |||||||||||||||||||||||||
Sbjct: 561 gtgaacatttaggtagtgtattagt 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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