BAC Information

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BAC

Clone NameMSMg01-366I09
Chromosome16 (Build37)
Map Location 24,676,226 - 24,676,676
singlet/doubletsinglet
Overlap geneLpp
Upstream geneEG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366I09.T7 (MSMg01no366_i09.b1)MSMg01-366I09.TJ (MSMg01no366_i09.g1)
ACCAG474216AG474217
length786779
length of high quality
(start - end)
472 (56 - 527)451 (77 - 527)
definitionCHROMAT_FILE: MSMg01no366_i09.b1 PHD_FILE: MSMg01no366_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:23 2005CHROMAT_FILE: MSMg01no366_i09.g1 PHD_FILE: MSMg01no366_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANAGATA
GGNGGAATTCTCACCTGATTACTACCGAATGGCAGAGAAGCACCTGAAAA
AATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCAACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGAGAGGATGTGGAGAAAGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCATATGTATCCCACAATACCTCTCCT
GGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACAAACTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGGAAAGAACCC
AGAATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTANAAAGAATGAATTTATGAAATTCCTA
AGCCAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCCATC
CCAATGTAATTCCCCCAAATGGACCCACTGGAAAGCGGAATTTAGCCCCA
AAACTTAAGAATACCCCCAATAAAAAATTTCCTTTTGTAAAATTCCGGAA
ACTCCATAAAAAAGAAAAAAATAATTTGGGACCCCTTTGCCCCCTCCTTA
AAAAGGGAAACAAAACCCCCGTATGTAAGATTGTCC
TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACTGACTAAATAGACTTGAAAA
GAAAATAACAGGGACATTTATAATCATGCTTTGCTTGTGTTATTAGTTTC
CTGGATTCCCTAAAATGAACTTCGTTTCTATTCTTAGGTTGTTGTCTGGG
AAGGTATTCTTTTCATAGTATTGTGGCAGAGAAGTAACGTCCAGGTCATT
GCATGTCAGAACACATTTGGCATTCTGTATGACTTGCGTAAGGAGTTTCT
TGAGATCTTAAAGTGGGATTTATTTATTAACATATAAAACATTTAACCTA
ACTTTCTTTAAGAAGTTTTTGATTTATTTCATTCCAATATTGAGAAATTA
CAAACACACCTGGGGTATTTTAGTCCCATTTCTGTGATGTGCCTAGTCAT
GTCATGACTAAGCACAAATAATGCTTAGTATTGTATTTTCATATTCTGGG
TGTGATATTACATATTGACTATGATTCTAGGAAACCAGGTTCCCAAGGTG
AACTTTTAAAAAATTATTTTTTAATTTTAAAATTATAATTACTCCATTTT
GTCTTCCTCCTTCCCTCCCTTTTGACAAAAAATCCCCGTTTTAATTTCCT
TCAAATTCAAGGGTTCTTTTTTTTTTTATTGTTGAATAATAAAAAATACT
GGGTATTTTTACACTTTTTTTTTTTTTAATTCGCCTACTTCTCCGTCTTT
TTTTTTTGTTGTATTCTCACCATATGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_i09.g1 MSMg01no366_i09.g1 CHROMAT_FILE:
MSMg01no366_i09.g1 PHD_FILE: MSMg01no366_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:24 2005
         (451 letters)



>mm_chr16_24676026_24676876
          Length = 851

 Score =  774 bits (400), Expect = 0.0
 Identities = 439/452 (97%), Gaps = 2/452 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactgactaaatagacttgaaaagaaaataacagggacatttataatcatgctttgctt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactgactaaatagacttgaaa-gaaaataacagggacatttataatcatgctttgctt 259

                                                                       
Query: 61  gtgttattagtttcctggattccctaaaatgaacttcgtttctattcttaggttgttgtc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 gtgttattagtttcctggattccctaaaatgaacttcatttctattcttaggttgttgtc 319

                                                                       
Query: 121 tgggaaggtattcttttcatagtattgtggcagagaagtaacgtccaggtcattgcatgt 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 tgggaaggtattcttttcatagtattgtggcagagaagtgacgtccaggtcattgcatgt 379

                                                                       
Query: 181 cagaacacatttggcattctgtatgacttgcgtaaggagtttcttgagatcttaaagtgg 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagaacacatttgacattctgtatgacttgcgtaaggagtttcttgagatcttaaagtgg 439

                                                                       
Query: 241 gatttatttattaacatataaaacatttaacctaactttctttaagaagtttttgattta 300
           ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 440 gatttatatattaccatataaaacatttaacctaactttctttgagaagtttttggtgta 499

                                                                       
Query: 301 tttcattcc-aatattgagaaattacaaacacacctggggtattttagtcccatttctgt 359
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttcattcccaatattgagaaattacaaacacacctggggtattttagtcccatttctgt 559

                                                                       
Query: 360 gatgtgcctagtcatgtcatgactaagcacaaataatgcttagtattgtattttcatatt 419
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 560 gatgtgcctagtcatgtcatgactaagcacgaataatgcttagtattgtatttttatatt 619

                                           
Query: 420 ctgggtgtgatattacatattgactatgattc 451
           |||||||||||||| |||||||||||||||||
Sbjct: 620 ctgggtgtgatattgcatattgactatgattc 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)