BAC Information

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BAC

Clone NameMSMg01-366M13
Chromosome16 (Build37)
Map Location 30,177,319 - 30,177,550
singlet/doubletsinglet
Overlap genenone
Upstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263
Downstream gene1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366M13.T7 (MSMg01no366_m13.b1)MSMg01-366M13.TJ (MSMg01no366_m13.g1)
ACCAG474414AG474415
length792761
length of high quality
(start - end)
243 (75 - 317)233 (80 - 312)
definitionCHROMAT_FILE: MSMg01no366_m13.b1 PHD_FILE: MSMg01no366_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:43 2005CHROMAT_FILE: MSMg01no366_m13.g1 PHD_FILE: MSMg01no366_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTATAATTTGCGGCGCTATACGANTCCTATTTTCAGAGAATCCGCG
GAATCATCTTGTTTCTTCATCAGAATTTCCTCTGTGGACTTATGCTCCTA
TTTTAAGGTGGCTGACAGTCAACATTGATGCTTGACAGGTGTGTGAGCTT
GTGATGTTTAGTCAGCATACTGTGGGTGTTGGGTATTGAACCCAGGTTTC
CTGGGAAAACAGCCAGTGCTCTTAACGGCTGAGCCATTTCTTTAGTCTTG
ATGCTTTGTTAATGTATAGTCCTATTTTTTAATATACTCCATGTGATGCA
ATTGTGGTATTAACCCTATGGTAGTTTTATCTTACTGAGAGAAAGAGACT
TTGGATAGGTCATTTGTTTATTTGCTTTGCTTTTATTTCAAATTAAGGAC
AGTTTCTAACTTTCTTTTCCAAATTCAGAAATAGAAGAGATCTTTTCTAC
AGACCTTGTGCCGGGAGACGTCATGATCATTCCATTAAATGGGACAGTCA
TGCCTTGTGATGCAGTACTTATTAATGGTACTTGCATTGTAAATGAAAGC
ATGTTAACAGGTAAATCTCCCACATCTTGCTCATTGTTTATTATAGCACT
CCAATTAATCCATTTTATTAAACTTTTCTCACATCCGGATCAATTCCCTT
TAAAATTGTGGTTTTTTTAGCAATTTTTTTGTTTTCCGGCTACCAATTCC
CCCTCTCCCATTTAGCTTACCCATTTATTATTTCTTGTCCTCCTTATTTC
CCCTAACTACCGTTTCTTTTCTCTACTTGTATTTTTTTCCTN
NCCCAAGAAGTGGAAGGCTGGGGGCGCCTGGTTTCCAAATTAGGTGAACT
ATAGAAGGTTCGCAAAATTCTTATGNAGNCGAGAAGGGCCTTGAGCTCCT
GATCCTCGTACTCCTCCTGCTCCCAGTGCTCCTCCTGCTTCCAAGTGCTG
TAGTGCTCTGTCATGGCCGGCTACAACTCATAAGTTCTGGATGGCATGAG
GAAGGCCTGTGCCACTGCTGTGGTCACTTTCATGGTCACTTTGTATTTCA
ACAGCACCTCAGTTCACATGACTCTTACTTAATAAGGATCCCAAAAGCCG
GGAACAGAAATCTGGATAANTCAGACATAACACAGAGGTCGGGAAGTGCT
TCCTTCCTGTATGTGTCACATCATCACAGGAAGAGGAGCAGCGGGGTACA
ATACAATACAGGATACAGAAAGAGGCCACGTTCACATGACTTCTTCTTTT
TTTTTTTTTTTGTTTTGTTTTGGTTGGTTGTTTTTGGGTTTTTTTNCTNN
TTTTTTTCTCNTTTATTTTTTTTTTTTTTNCTTTTTTTTTTTTTTTTTTT
TCTTCTTTCCCTTACTCCTTTTCTTTCTTCCCCTTTTTCTTTTTTCTCCC
TTTCCTTTTTTTTTTTTTCTTTTCNTCTTTTTTCTTTANCATTATTTTTT
TTTTATTTCTCTACACCTATACCACACCAATTATCTCTTTTCCCCTATCT
AACTTCTATTTTTTATTTCCCCCCCCACCTCCACCTTTTTTTTATTTATC
TTTTCTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_m13.g1 MSMg01no366_m13.g1 CHROMAT_FILE:
MSMg01no366_m13.g1 PHD_FILE: MSMg01no366_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:43 2005
         (233 letters)



>mm_chr16_30177118_30177750
          Length = 633

 Score =  387 bits (200), Expect = e-112
 Identities = 224/232 (96%)
 Strand = Plus / Plus

                                                                       
Query: 2   gagaagggccttgagctcctgatcctcgtactcctcctgctcccagtgctcctcctgctt 61
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 202 gagaagggccttgagctcctgatccttgtactcctcctgctcccagtgctcctcctgctt 261

                                                                       
Query: 62  ccaagtgctgtagtgctctgtcatggccggctacaactcataagttctggatggcatgag 121
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccaaatgctgtagtgctctgtcatggccggctacaactcataagttctggatggcatgag 321

                                                                       
Query: 122 gaaggcctgtgccactgctgtggtcactttcatggtcactttgtatttcaacagcacctc 181
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 322 gaaggcctgtgccactgctgtggtcactttcatggtcactttgtagcacaacagcacctc 381

                                                               
Query: 182 agttcacatgactcttacttaataaggatcccaaaagccgggaacagaaatc 233
           |||||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct: 382 agttcacatgacccctacttaataaggaccccaaaagccgggaacagaaatc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)