Query= MSMg01no367_k03.b1 MSMg01no367_k03.b1 CHROMAT_FILE:
MSMg01no367_k03.b1 PHD_FILE: MSMg01no367_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:51 2005
(548 letters)
>mm_chr16_70611668_70612615
Length = 948
Score = 1031 bits (533), Expect = 0.0
Identities = 542/545 (99%)
Strand = Plus / Plus
Query: 4 ggaattctaagtgtgatacctgtccaatcaggcatttatatgaaggtgctagatctaaaa 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaagtgtgatacctgtccaatcgggcatttatatgaaggtgctagatctaaaa 263
Query: 64 gctagttctcagggtcatgtgacaagcatattgtccactaagctatgttcccagaccctg 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 gctagttctcagggtcatgtgacaagcatattgtccactaagctatgttcccagacccag 323
Query: 124 agaccttatgatgttatggttacttgcttgatttttttctccccatacttcaaggaattt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaccttatgatgttatggttacttgcttgatttttttctccccatacttcaaggaattt 383
Query: 184 tgcacatcagtttttattttttcactgaggaaaaattagacatactaaacacaaaaacat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcacatcagtttttattttttcactgaggaaaaattagacatactaaacacaaaaacat 443
Query: 244 taggtatgcagtatgtttcaagatatctagagactgtgccaagtgcatattcatcccata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taggtatgcagtatgtttcaagatatctagagactgtgccaagtgcatattcatcccata 503
Query: 304 tgcagccaccaaacccattcactattgctgatgtcaagaagcgcttgttgacaggagcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcagccaccaaacccattcactattgctgatgtcaagaagcgcttgttgacaggagcct 563
Query: 364 gatatagctgactcctgagggggctctgccagtgcctgacatatagagatgcggatcctc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatatagctgactcctgagggggctctgccagtgcctgacatatagagatgcggatcctc 623
Query: 424 acagccaaccattggtctgagaagtaggatcccactggaggagttgaggaaaggactaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 624 acagccaaccattggtctgagaagtaggatcccactggaggagttgaggaaaggactgaa 683
Query: 484 ggagctgaagtgaaacactaagtatgttttgacttcttaataatgtttataagccacaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggagctgaagtgaaacactaagtatgttttgacttcttaataatgtttataagccacaaa 743
Query: 544 tgatc 548
|||||
Sbjct: 744 tgatc 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_k03.g1 MSMg01no367_k03.g1 CHROMAT_FILE:
MSMg01no367_k03.g1 PHD_FILE: MSMg01no367_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:51 2005
(575 letters)
>mm_chr16_70769294_70770270
Length = 977
Score = 1089 bits (563), Expect = 0.0
Identities = 573/577 (99%), Gaps = 2/577 (0%)
Strand = Plus / Minus
Query: 1 ctggaggccacaaggacaagactgtctgaattttcttatttatttttttaagagcaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ctggaggccacaaggacaagactgtctgaattttcttatttatttttttaagagcaagct 718
Query: 61 ggattgacaacagatatgggaaaaatgatttcaaggtataagagagctctctaagaagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ggattgacaacagatatgggaaaaatgatttcaaggtataagagagctctctaagaagtc 658
Query: 121 taaggggaacctggcctgtagtacttatttggtactcaaatgttgatggttcttaaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taaggggaacctggcctgtagtacttatttggtactcaaatgttgatggttcttaaatgt 598
Query: 181 atttcatagatgccatcaatttccatcctcactcccagccacttccaatgtatatacagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atttcatagatgccatcaatttccatcctcactcccagccacttccaatgtatatacagt 538
Query: 241 aagaaaagaagacatttaaaaaaactgaaagagtaataattaggtaggtatcctaaaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aagaaaagaagacatttaaaaaaactgaaagagtaataattaggtaggtatcctaaaaac 478
Query: 301 ggtcctggaggaaaaaaaaaatggaat--tttttttccatctgacacactcagacaaaag 358
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 477 ggtcctggagggaaaaaaaaatggaatgttttttttccatctgacacactcagacaaaag 418
Query: 359 ctaaatgaagtgtgttgttcaagagagaaaattggcttttctaatcaaagaaaaatttga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctaaatgaagtgtgttgttcaagagagaaaattggcttttctaatcaaagaaaaatttga 358
Query: 419 gttttcagattttattttgtagtaacttctgtctgcatatggattcagcaattccaaggg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gttttcagattttattttgtagtaacttctgtctgcatatggattcagcaattccaaggg 298
Query: 479 gttccttttccgaggggccgtgtaagaggcatcagaacacagtgcccatagcttgagaag 538
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gttccttttccgaggggccctgtaagaggcatcagaacacagtgcccatagcttgagaag 238
Query: 539 ggaacccaactcataaaagagttggcaagtgacttgc 575
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggaacccaactcataaaagagttggcaagtgacttgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 977
Length adjustment: 10
Effective length of query: 565
Effective length of database: 967
Effective search space: 546355
Effective search space used: 546355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
