Query= MSMg01no368_d06.b1 MSMg01no368_d06.b1 CHROMAT_FILE:
MSMg01no368_d06.b1 PHD_FILE: MSMg01no368_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:35 2005
(620 letters)
>mm_chr16_63049753_63050772
Length = 1020
Score = 1154 bits (597), Expect = 0.0
Identities = 612/617 (99%), Gaps = 2/617 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatcatcatcctgtgtattgtgatataacccagtaaaagaaaccaaattagtta 64
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcaatcatcatcctgtgtattgtgatataacccagtaaatgaaaccaaattagtta 264
Query: 65 tgctattagccgagagcccagtcctcctgaaacctctttccaacagcagcattttctttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctattagccgagagcccagtcctcctgaaacctctttccaacagcagcattttctttg 324
Query: 125 cgtctaggtttggttagggtagtgatgggcacctgtatcccatacattcatactcacttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtctaggtttggttagggtagtgatgggcacctgtatcccatacattcatactcacttg 384
Query: 185 agtctctcctgcctttgaagctctgcagtttacttgag-cagatctatgttattttgagg 243
||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct: 385 agtctctcctgcctttgaagctctgcattttacttg-gacagatctatgttattttgagg 443
Query: 244 gtcttcacacaggaatgacttgagggtaaagatgaagtgtgagatgggtggccctatact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcttcacacaggaatgacttgagggtaaagatgaagtgtgagatgggtggccctatact 503
Query: 304 aataggcatgacataatcacttttcatttcaagtaagagctgaaattgattttagtgcac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aataggcatgacataatcacttttcatttcaagtaagagctgaaattgattttagtgcac 563
Query: 364 tcactttaactgacaaaacaaacaaacaaacaaacaacaacaaaaactttcaatgttctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcactttaactgacaaaacaaacaaacaaacaaacaacaacaaaaactttcaatgttctg 623
Query: 424 acttatgcaactactatctcacacgactgagccaatctatttctgatttggagacttcct 483
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 624 acttatgcaactactatctcacatgactgagccaatctatttctgatttggagacttcct 683
Query: 484 gactgcttcagtgtaataaaagcatctccactctttcccacctttaggagtggagttaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gactgcttcagtgtaataaaagcatctccactctttcccacctttaggagtggagttaag 743
Query: 544 gtcattgtacttttggcacaagaggtactatttcttttgttgtaaacatacatgagtagg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtcattgtacttttggcacaagaggtactatttcttttgttgtaaacatacatgagtagg 803
Query: 604 tgaaaatatagcgagca 620
|||||||||||||||||
Sbjct: 804 tgaaaatatagcgagca 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_d06.g1 MSMg01no368_d06.g1 CHROMAT_FILE:
MSMg01no368_d06.g1 PHD_FILE: MSMg01no368_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:35 2005
(572 letters)
>mm_chr16_63245194_63246162
Length = 969
Score = 1075 bits (556), Expect = 0.0
Identities = 567/572 (99%), Gaps = 3/572 (0%)
Strand = Plus / Minus
Query: 1 catgatgtagagctaaaaaggaaaatgtgtttcactgtacacctgtctctaaggaggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 catgatgtagagctaaaaaggaaaatgtgtttcactgtacacctgtctctaaggaggact 710
Query: 61 ctcatcaagagatgagatggcttaaatagagcaatttatctcatttggaggtttctacca 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ctcatcaagaga--agatggcttaaatagagcaatttatctcatttggaggtttctacca 652
Query: 121 ccaaagtgcctttatcattttatataggatgcttaaaatcaaaatggctggttcatcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ccaaagtgcctttatcattttatataggatgcttaaaatcaaaatggctggttcatcaaa 592
Query: 181 agctaaaaggtactagaaaaaaaaatgcaacaggagccatttccacagctgatgcttatc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agctaaaaggtactag-aaaaaaaatgcaacaggagccatttccacagctgatgcttatc 533
Query: 241 tcaagagaccaaacagtaagtttcagtggaatgaatcctcccatttttttacatgtgctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tcaagagaccaaacagtaagtttcagtggaatgaatcctcccatttttttacatgtgctt 473
Query: 301 attttgtatgtaattacaatttacagggaattgtgcaccatggaccagattctcatagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 attttgtatgtaattacaatttacagggaattgtgcaccatggaccagattctcatagtc 413
Query: 361 tatgataaacaactgagattacaaatacagattgttcactctaggatgtgtgagataatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tatgataaacaactgagattacaaatacagattgttcactctaggatgtgtgagataatt 353
Query: 421 gaagtaaaaaacacattgaaggaatatttggtttgggtatgaaacagcatgtagctctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaagtaaaaaacacattgaaggaatatttggtttgggtatgaaacagcatgtagctctga 293
Query: 481 gaccatttgttgtgaaggaggtgtttttacaaaccaagaatttttannaccaactggaat 540
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 292 gaccatttgttgtgaaggaggtgtttttacaaaccaagaatttttaaaaccaactggaat 233
Query: 541 atatttattttccaattctctcctctgactgt 572
||||||||||||||||||||||||||||||||
Sbjct: 232 atatttattttccaattctctcctctgactgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 969
Length adjustment: 10
Effective length of query: 562
Effective length of database: 959
Effective search space: 538958
Effective search space used: 538958
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
