Query= MSMg01no368_h19.b1 MSMg01no368_h19.b1 CHROMAT_FILE:
MSMg01no368_h19.b1 PHD_FILE: MSMg01no368_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:56 2005
(624 letters)
>mm_chr16_88138910_88139933
Length = 1024
Score = 899 bits (465), Expect = 0.0
Identities = 498/509 (97%), Gaps = 1/509 (0%)
Strand = Plus / Minus
Query: 116 ggtgctggatggagatgtcatgacgacaaagatgaaaattgcccccaatgatgcagatgt 175
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 1018 ggtgctggatggagatgtcatgacgacgaagatgaaaattgcccccaatgatgtagatgt 959
Query: 176 ccctatcagcaggaataacccctttcctctctagccttctttatctcctacttagtgttg 235
|||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 958 ccctatcaacaggaataa-ccctttcctctctagctttctttatctcctacttagtgttg 900
Query: 236 gggagttgaaaagaaaatggcaagagtaggatggtagaaatagaaacccacaaagttgcc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 gggagttgaaaagaaaatggcaagagtaggatggtagaaatagaaacccacaaagttgcc 840
Query: 296 aagagtcaggctatagtttcaaaatcagttgtaatcaaaatcacacttttaataaaacaa 355
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 839 aagagtcaggctatagtttcacaatcagttgtaattaaaatcacacttttaataaaacaa 780
Query: 356 atggtaaagagcatcaaccacttctcaaatatgtgacttacagtctcttttaaatatgaa 415
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 779 atggtaaagagcatcaaccacttctcaaatatgtgacttacagtatcttttaaatatgaa 720
Query: 416 aacaacctactaaagtcaactgatcctctaacttaatggaccaaggtcaacagcctaaca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aacaacctactaaagtcaactgatcctctaacttaatggaccaaggtcaacagcctaaca 660
Query: 476 tccaaccacaatgcttagacattgctacttagacaaattatactgaaaagatgctgtggg 535
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 659 tccaaccacaatgcttagacattgctacttagacacattatactgaaaagatgctgtggg 600
Query: 536 aaaagacccagactcccccctccccccacacaccagtttttctttttggacaataagcat 595
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 599 aaaagacccagactccctcctccccccacacaccagtttttctttttgaacaataagcat 540
Query: 596 agatatgaagatatcaagccacatgtcaa 624
|||||||||||||||||||||||||||||
Sbjct: 539 agatatgaagatatcaagccacatgtcaa 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_h19.g1 MSMg01no368_h19.g1 CHROMAT_FILE:
MSMg01no368_h19.g1 PHD_FILE: MSMg01no368_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:56 2005
(497 letters)
>mm_chr16_87989111_87990008
Length = 898
Score = 764 bits (395), Expect = 0.0
Identities = 483/537 (89%), Gaps = 41/537 (7%)
Strand = Plus / Plus
Query: 1 caagtggttaccatgcctacccggcttctacaagggctgtgtgcattgtcgctattatcc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 165 caagtggttaccatgcctacccggcttctacaagggctgtgtgcattgtcacttttatcc 224
Query: 61 tcattcatttggagaaagttctttatccactcagccatctcctaa--------------- 105
| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 225 ttattcatttggagaaagttctttatgcactcagccatctcctaagctcttaatatttct 284
Query: 106 ---------------------gctcttaatatttctaacagtccaacttacacccagttc 144
||||||||||||||||||||||||||||| |||||||||
Sbjct: 285 ttttttctttcttttttttttgctcttaatatttctaacagtccaacttaaacccagttc 344
Query: 145 tcatataaaacagg--aaaaaaaaacccaaggtaaatgtctaggctacaagtcaatattg 202
|||||||||||||| |||||||||||||||||||||||| ||| || |||| |||||||
Sbjct: 345 tcatataaaacaggaaaaaaaaaaacccaaggtaaatgtccaggttataagttaatattg 404
Query: 203 aggaatctataggtgacttggttaaaaaaatatcctttactctgagtttgaaaaacttga 262
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 405 aggaatctataggtgacttggtt-aaaaaatatcctttactccaagtttgaaaaacttga 463
Query: 263 agttaaatattaagtatatatacttaagatacaaattttattccatcaaaatcaaattta 322
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 464 agttaaatattaagtatatatacttaagatataaattttattccatcaaaatcaaattta 523
Query: 323 catagcaaaagagtgacagaaaattgcccatattttatacaattctcaggtgacacccca 382
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 524 catagcaaaagagtgacagaaagttgcccatattttatacaattctcaggtgacacccca 583
Query: 383 tatgcatattatatgactataagtatt--tatatatatatacatacatacatatactatc 440
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 584 tatgcatattatatgactataagtattgatatatatatatacatacatacatatactatc 643
Query: 441 tgaaaataatttttattcttatgcagtgaatctactttaaagcagatcaattaagaa 497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgaaaataatttttattcttatgcagtgaatctactttaaagcagatcaattaagaa 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space: 432456
Effective search space used: 432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
