BAC Information

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BAC

Clone NameMSMg01-368J19
Chromosome16 (Build37)
Map Location 62,205,548 - 62,206,168
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368J19.T7 (MSMg01no368_j19.b1)MSMg01-368J19.TJ (MSMg01no368_j19.g1)
ACCAG475795AG475796
length747751
length of high quality
(start - end)
624 (44 - 667)494 (66 - 559)
definitionCHROMAT_FILE: MSMg01no368_j19.b1 PHD_FILE: MSMg01no368_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:06 2005CHROMAT_FILE: MSMg01no368_j19.g1 PHD_FILE: MSMg01no368_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGGGATATCTCCTTTGCTATTTCTACCATAGTAACTCTTACTCACA
GAATGGAAAGTCAAGTGCAACCTCTTTCCATTGGCAAGACTATACTTTGA
GAATATAGCTCCATAAGACTTTAATCCTATGATAAATTTAGGACAATAGA
AAACAGCAACTAAATAGTTTTAAGGGTTCAGTTTTAAATTATTTGTCACA
TTACAAAGTTATTTTAAGATAGTGTAGTTTGACATTATTTTAATCCATAA
TCTATTTTATGAGTGATGAAAAAATCTCATTTTAGGTATAGTCCTGGAAT
TAATAAGAGATGATGTTGGTGGTGGAGAATTAAATGATATCCTTTTATGA
TAAGACTATAAGAGGGAGATAAATACAGTTTTTATATAAAAGACTGGGTT
AGCTATTCAGAAATATTAGAGTCCTCGTAATCTATATGGATTTGAGTTTT
TCAAGAGTAGTGTCATCTTTGTGCTCTAAAAAAAATACAAGAGCAAGTCT
GGAAATTCAACTTTCATTGTAAATCAGCAGTATGTAGGATTGATCTTTGC
GTTTTGGTTTAGAGAACAATGTTTGTTTCCACAGGTGAAAATAGATGTTT
TAACACCGTTGCAGAAAGTCCTGAGATTGAAGTCTATTGCTTGAGCTGAA
AACAAAGAAATCTGACTTGGTACTCTTTTTAAGATGCCAAATGAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGTTTAGCTCTACAGGCAATTTTTTTTCTTTTT
TCTTTTAAATGTGTTTCTTTTTCTTATTTAATTTTATTTTTAATTCATTT
TTTATGCTCCATATTCCATTCCCTGCCTTCATATCTACCCTCCGAATACT
CCACATCGCACATGTACTCCCCCACCCCCCACCACCTGACCTCTAAATTC
TCTGGTGCCTCCAGTCTCTTGAGGGTTAGGTGCATAATCTCTGAATGAAC
ACAGACCCAGAAGTCCTCTACTGTATTTGTGTGTGTGTGTNGGGGGGGGG
TTCATATCAGCTGGTATACACAGTCTGTATGGCCGTCCAGGGTTTGAGAG
ATCTCAGGGGTACAGATTAATTGAGACTGGTGGTCCTGGTGGTCCTCCTA
CAGGATTGCCCTTCTCCTCAGCTTCTTTCAGCCTTCCCTTATTCGACAAC
AGGTTTCAGCTGCTTCTGTCCATTGGTTGGGTGCAAATATCTGCATCTGA
TTCTTTCAGATGTTTGTGGTGTTCTTCGGAGGNCAGTCATGATGGATCCC
ATTTGGTGAGCTCTCAGTAATGGTGTCAGGGCTTGGGACCTCCCCTGTAG
CTGGATCCACTTTGGGCCTGTCCCGGGACCTTCTTTTATCAAAGTATCCC
CAATTTCATCCTTGAAGTTTTTCCAACAGGAACACTTGGAGTCAGAGTGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_j19.b1 MSMg01no368_j19.b1 CHROMAT_FILE:
MSMg01no368_j19.b1 PHD_FILE: MSMg01no368_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:06 2005
         (624 letters)



>mm_chr16_62205345_62206368
          Length = 1024

 Score = 1147 bits (593), Expect = 0.0
 Identities = 614/621 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggggatatctcctttgctatttctaccatagtaactcttactcacagaatgg 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ggaattctggggaaatttcctttgctatttctaccatagtaactcttactcacagaatgg 765

                                                                       
Query: 64  aaagtcaagtgcaacctctttccattggcaagactatactttgagaatatagctccataa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 764 aaagtcaagtgcaacctctttccattggcaagactatactttgagaatatagctccatac 705

                                                                       
Query: 124 gactttaatcctatgataaatttaggacaatagaaaacagcaactaaatagttttaaggg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 704 gactttaatcctatgataaatttaggacaatagaaaacagcaactaaatagttttaagtg 645

                                                                       
Query: 184 ttcagttttaaattatttgtcacattacaaagttattttaagatagtgtagtttgacatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttcagttttaaattatttgtcacattacaaagttattttaagatagtgtagtttgacatt 585

                                                                       
Query: 244 attttaatccataatctattttatgagtgatgaaaaaatctcattttaggtatagtcctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 attttaatccataatctattttatgagtgatgaaaaaatctcattttaggtatagtcctg 525

                                                                       
Query: 304 gaattaataagagatgatgttggtggtggagaattaaatgatatccttttatgataagac 363
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattaatgagagatgatgttggtggtggagaattaaatgatatccttttatgataagac 465

                                                                       
Query: 364 tataagagggagataaatacagtttttatataaaagactgggttagctattcagaaatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tataagagggagataaatacagtttttatataaaagactgggttagctattcagaaatat 405

                                                                       
Query: 424 tagagtcctcgtaatctatatggatttgagtttttcaagagtagtgtcatctttgtgctc 483
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tggagtcctcgtaatctatatggatttgagtttttcaagagtagtgtcatctttgtgctc 345

                                                                       
Query: 484 taaaaaaaatacaagagcaagtctggaaattcaactttcattgtaaatcagcagtatgta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 taaaaaaaatacaagagcaagtctggaaattcaactttcattgtaaatcagcagtatgta 285

                                                                       
Query: 544 ggattgatctttgcgttttggtttagagaacaatgtttgtttccacaggtgaaaatagat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggattgatctttgcgttttggtttagagaacaatgtttgtttccacaggtgaaaatagat 225

                                
Query: 604 gttttaacaccgttgcagaaa 624
           |||||||||| ||||||||||
Sbjct: 224 gttttaacactgttgcagaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)