BAC Information

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BAC

Clone NameMSMg01-369E04
Chromosome16 (Build37)
Map Location 28,197,943 - 28,198,196
singlet/doubletsinglet
Overlap geneFgf12
Upstream geneOstn, Uts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369E04.T7 (MSMg01no369_e04.b1)MSMg01-369E04.TJ (MSMg01no369_e04.g1)
ACCAG476291AG476292
length774793
length of high quality
(start - end)
254 (60 - 313)387 (77 - 463)
definitionCHROMAT_FILE: MSMg01no369_e04.b1 PHD_FILE: MSMg01no369_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:56 2005CHROMAT_FILE: MSMg01no369_e04.g1 PHD_FILE: MSMg01no369_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TATTATACCCTGAAAGAGCTATAATGATATATTTAGCTGATTAAGTGTGT
ACTTCTAATACCTATAATTGGCAATGGGTCAGCTCTTTATTAGTAATACA
GGCATGATGTCATAAAAAGCATGCATTGTTGAGAGCATTGCTGCCAGGTA
AGGAACATGGTTTTATTCTCTCCTTTCATTTTCTCCAGCCAATCTGTGAC
TCCAATGCTTTTTTATTGAAACATAACTTATACACAATAAAATCCACGTT
TAAAACTTATAGCTCAATGGATTTTAGAATTTCTACAAAGTTGCACAAAT
ATCAGAACTATTTAATTCTGACTCATTTCCATCTCTCCGGGGAAGCAGTC
ATTCTCTGCTTTATTCCAACTCTGTGGTAGCACTTGACATCCATTACATT
CCATTTCGAAAATTGTTTGCTTATTATATGCAATATTATAAACCCTGTTG
TAATACCTTATAAAAGTGCTAATCAATAACTCGTACCATTTTTCCCTATG
TAGTCCCCCTATTTTGTGCTTTACTTTANAATAATGTTTCTTCTGCTCTT
TTTATTTTGCCCTTATGTATCTCCCTCCCCCTTGCTTTTTTACCCCTTTC
TTTACCCCCTCCACTCTCCCCTTTTTTCTCCTTTCCTCCTCCCATTTTTT
CTTTTTCCCTCTTTCCTGTTTCTCATTTTCTTATCTCCAACTTGCCTACC
TTTGTTTCTTTTTTCCTCCACCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATGAATACCTGTTAAGTTATTC
TATTTTTTTCAATTTTTTATTAGATATTTTTTTCATTTACGTTTCAAATG
CTTATAAAATTTGCAAGACCAAGGGACCTCTCTTCCCATTGATGGCCAAC
TAGGCCATCTTCTGCTACATATGCAGCTAGAGACACAAGCTCTGGGGGTC
CTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCTCTTCAG
CCCCTTGGGTACTTTCTTTAGCTCTTCCACTGGGGGCCCTGTGTTCCATC
CAATAGATGACTATGAGCATCCCACTTCTGTATTTGCCAGGCACTGTCAT
AGCCTCACAAGAGAGAGCTATATCAGGGTCCTGTCAGCAAAATCTTTCTG
GCAAATGCAATAGTGTCTGGGTTTGTTGGCTGATTATGGGATGGATCATT
GGGTGGTGGAGTCTCTGGATGGCCTTATCGACTTTATTTTATTTATTTAT
TTACTTACTCATTCATTTTTTTCATTAATCTCTCCACTTTCTCTTTTGCT
TTTTTACCGACTCCGCTTCTCTTGTTTTTTCCCTGCCTTTTTCTGACCAT
CTCTCCGCTATATCCTTCTTTTCTCTTATTTTTTCCCCCCTCCTCTCTAT
TTACTCCCTCCTTTTTCTTCTTTCCACCTTTTTAATCTCTTCTTCTCATA
TTTATTCCTTCCCCTCCCCTCTTTTCCTTTTTTTCTTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_e04.b1 MSMg01no369_e04.b1 CHROMAT_FILE:
MSMg01no369_e04.b1 PHD_FILE: MSMg01no369_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:56 2005
         (254 letters)



>mm_chr16_28197743_28198396
          Length = 654

 Score =  491 bits (254), Expect = e-143
 Identities = 254/254 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaagagctataatgatatatttagctgattaagtgtgtacttctaatacctataatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctgaaagagctataatgatatatttagctgattaagtgtgtacttctaatacctataatt 395

                                                                       
Query: 61  ggcaatgggtcagctctttattagtaatacaggcatgatgtcataaaaagcatgcattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggcaatgggtcagctctttattagtaatacaggcatgatgtcataaaaagcatgcattgt 335

                                                                       
Query: 121 tgagagcattgctgccaggtaaggaacatggttttattctctcctttcattttctccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgagagcattgctgccaggtaaggaacatggttttattctctcctttcattttctccagc 275

                                                                       
Query: 181 caatctgtgactccaatgcttttttattgaaacataacttatacacaataaaatccacgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 caatctgtgactccaatgcttttttattgaaacataacttatacacaataaaatccacgt 215

                         
Query: 241 ttaaaacttatagc 254
           ||||||||||||||
Sbjct: 214 ttaaaacttatagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)