BAC Information

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BAC

Clone NameMSMg01-369E05
Chromosome16 (Build37)
Map Location 47,780,799 - 47,781,283
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628757, LOC628776
Downstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369E05.T7 (MSMg01no369_e05.b1)MSMg01-369E05.TJ (MSMg01no369_e05.g1)
ACCAG476293AG476294
length756760
length of high quality
(start - end)
423 (39 - 461)485 (65 - 549)
definitionCHROMAT_FILE: MSMg01no369_e05.b1 PHD_FILE: MSMg01no369_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:56 2005CHROMAT_FILE: MSMg01no369_e05.g1 PHD_FILE: MSMg01no369_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCTGACGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCA
GGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG
GACATAATACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCC
AGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTA
CTCAGCTATTAAAAAGAATGAATTTATGAATTTCCTATCCAAATGCATGG
ACCTGGAGGGCATCATCCTGAGCTAGGCTATACATTCCCTAATAAACTCC
CATAATATGTTACCTTTGATTAGTGGATATTAGATCCGAGTCTTTCTGGA
ATTCTTGTTCGTTTATCTATGGTGGTTTCTGGTTCCTACCATAATCCTAA
GTTGTACCCTTTTTATTTTCTTATTTTACCTTGTGTTGTCTTTTTTGATT
TGCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTCTGCAACCTCGCCCCTTTATTCTTTCAGCTTCA
TGTCCATTCCCCTTTTCAAATCTTCATGGCTTGTCCTCCACACTAATGTA
GTGGATGTCTTTTACTTTTGTTCATACAATAGTCAAATGATATTCTTATT
ATTAAGCTTTTAGTATTGCAATTGATAGTGACTTACTTCTCTGTGGCTTC
TATCAGGTTGTAAACTCCATGAGGACCTTCTAACTTAATTACTTTATTGT
AGTAAAATGTACATGACAAAAATTGAGTATTTTAGCTATGATAACTTCTG
AGTTTTTATTACCTTTATTTATCTCCAGAACTTTATTATCTTCAGAAATG
AAACTTTTACTGAGTAAGCACTGATCTCCTCACCCTTCCTCCTACCTCCT
AGAGACCACATGTTGAACTCTCAGGGATGAACATAGTGTCTGCCATATCA
GGGGTAAGCAACACAAACAGGTGTTTATTCAGTAAGTGCATGTCTGTGCT
TAGTAATTTGTGTCTTTTTTTCAAGAAGAAAATGTGGCCTGATATTTTAA
AATTTGGAATAATGATTTCATCTCTATATTAACCAAGTGAAATTTAATGG
ATCAATATTTGTTCCATTCCATTCTTATTTGATAAAAGGATATTCTGAAT
TTAAAAAACTCATTTTACGAAAATTTCCTTAAAACAATTGTGATAAAAAT
GGTTTGGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_e05.g1 MSMg01no369_e05.g1 CHROMAT_FILE:
MSMg01no369_e05.g1 PHD_FILE: MSMg01no369_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:56 2005
         (485 letters)



>mm_chr16_47780791_47781675
          Length = 885

 Score =  922 bits (477), Expect = 0.0
 Identities = 483/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctgcaacctcgcccctttattctttcagcttcatgtccattccccttttcaaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgtctgcaacctcgcccctttattctttcagcttcatgtccattccccttttcaaatctt 434

                                                                       
Query: 61  catggcttgtcctccacactaatgtagtggatgtcttttacttttgttcatacaatagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 catggcttgtcctccacactaatgtagtggatgtcttttacttttgttcatacaatagtc 374

                                                                       
Query: 121 aaatgatattcttattattaagcttttagtattgcaattgatagtgacttacttctctgt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 aaatgatattcttattattaagcttttagtattgcaattgatagcgacttacttctctgt 314

                                                                       
Query: 181 ggcttctatcaggttgtaaactccatgaggaccttctaacttaattactttattgtagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggcttctatcaggttgtaaactccatgaggaccttctaacttaattactttattgtagta 254

                                                                       
Query: 241 aaatgtacatgacaaaaattgagtattttagctatgataacttctgagtttttattacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaatgtacatgacaaaaattgagtattttagctatgataacttctgagtttttattacct 194

                                                                       
Query: 301 ttatttatctccagaactttattatcttcagaaatgaaacttttactgagtaagcactga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttatttatctccagaactttattatcttcagaaatgaaacttttactgagtaagcactga 134

                                                                       
Query: 361 tctcctcacccttcctcctacctcctagagaccacatgttgaactctcagggatgaacat 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tcgcctcacccttcctcctacctcctagagaccacatgttgaactctcagggatgaacat 74

                                                                       
Query: 421 agtgtctgccatatcaggggtaagcaacacaaacaggtgtttattcagtaagtgcatgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  agtgtctgccatatcaggggtaagcaacacaaacaggtgtttattcagtaagtgcatgtc 14

                
Query: 481 tgtgc 485
           |||||
Sbjct: 13  tgtgc 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)