BAC Information

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BAC

Clone NameMSMg01-369G17
Chromosome16 (Build37)
Map Location 69,536,278 - 69,536,807
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneSpeer2, EG664930, Gbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369G17.T7 (MSMg01no369_g17.b1)MSMg01-369G17.TJ (MSMg01no369_g17.g1)
ACCAG476412AG476413
length705736
length of high quality
(start - end)
487 (46 - 532)532 (69 - 600)
definitionCHROMAT_FILE: MSMg01no369_g17.b1 PHD_FILE: MSMg01no369_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:08 2005CHROMAT_FILE: MSMg01no369_g17.g1 PHD_FILE: MSMg01no369_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCTGATCAGAGAAGACCTTATACCAATGCTCTTCAAACAATTT
TCCAAAATAGAAACAGAAGGAACACTACCCAATGAATTCTGTGAAACCAC
ATTTATGCTCATACCTAAATGAAACACCCTACAAAGTAAGAGATCTTCAG
ACTAATTTCCCTTATGAATGTCAATGCAAAAATAAACAATAAAATTCTTG
CAAACTGAATCCAAGAACACTTCAAAATGATAATCCTGAATAAGTAGCCT
TCATCCCAGTGATGCTGGTATAATTCAATACACAGATATCAAGCAACGTG
ATCCACTATGTAAACAAACTCAAAGAACAAAACCACATGATCATCTCATT
ATATTCTGAGAAAGTATTTGACAAAATTCAACACCCCTTCATGGTAAAAG
TCTTGGAAAGATCAGGAATTCAAGGTCCAAACCTAACCATAGTANAAGCA
ATATACAGCATACCAGTATCCAACATCAAACTGAATGGGGATAAACTTGA
AGCAATCCCACTAAAATCAGGGACTATAAAAAGCTACCCACTCTCTTCCT
ACCTAATCCATAATGTACCTTAATTTCCTATCTATATCTATTAGGTTTTC
TAATATAAGTTTTAAGACATACTTTATTGTACTTTGAAAAAACTTCCAAT
AACTN
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGGCAACATGAGCTCTGTTAATTTCTTCAC
CACTCCTTACTATTGTTATTCAAAGTAAATGTAGCAATATGTTTATGCTT
TTGATTTATTGTCATTTTTAAAATAGCATTAAGCATTAAAGTATCTATAT
AGTAAAGGTTAATATAAACGTGGTCTCTATTTTTAAAATCAAAATAAGAC
ATTACCAGCAGTTTAAGAGAAACTAGCCTTATAAGATTTAAACACCACAT
AAATACATTTGTTACGATTAAACGAAATATATCTAAAAGATTACTTTTTT
AAAGAAATAGGAATTATTTACTGGAAAGTTTGGAAGCTAATGACCCAAAC
GCTGATGAGCCTAGGGCTCTGGCATCTGGTGACAACACTGTTGGTTATGA
TATCATGTTGACAATAATTTTTACAAAAAAAGAATACAGATGGCCATACA
GGAAATGTAAATCTGAGGTAGAGGTTAGATATGTTCTCTCATGAGATCTC
ACCCCCAAGAATTAATATTTACTCCAGAGCCTGGCACCTTACATCATCCT
GGGATCGTCCATAAAATTCATCAGTTAATATCTTCCAAAAAATATATCTA
TTCCCGGGGACCAAATGCCAAACACATGAGTCTCTTAAGACCACAGAGCA
TACCCAAGGCAAAGCAGCAACATTAAACTATATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_g17.g1 MSMg01no369_g17.g1 CHROMAT_FILE:
MSMg01no369_g17.g1 PHD_FILE: MSMg01no369_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:08 2005
         (532 letters)



>mm_chr16_69536078_69537008
          Length = 931

 Score =  911 bits (471), Expect = 0.0
 Identities = 516/531 (97%), Gaps = 1/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggcaacatgagctctgttaatttcttcaccactccttactattgttattcaaagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tctggcaacatgagctctgttaatttcttcaccactccttactattgttattcaaagtaa 671

                                                                       
Query: 61  atgtagcaatatgtttatgcttttgatttattgtcatttttaaaatagcattaagcatta 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 670 atgtagcaatatgtttatgcttttgatttattgtcattttttaaatagcattaagcatta 611

                                                                       
Query: 121 aagtatctatatagtaaaggttaatataaacgtggtctctatttttaaaatcaaaataag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 610 aagtatctatatagtaaaggttaatataaacgtggtctctatttttaaaattgaaataag 551

                                                                       
Query: 181 acattaccagcagtttaagagaaactagccttataagatttaaacaccacataaatacat 240
           |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 550 acattaccagaagtttaagagaaactagccttataagatttaaacaccacattaatatat 491

                                                                       
Query: 241 ttgttacgattaaacgaaatatatctaaaagattacttttttaaagaaataggaattatt 300
           |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 490 ttgttatgattaaatgaaatatatctaaaagattacttttttaaagaaatgggaattatt 431

                                                                       
Query: 301 tactggaaagtttggaagctaatgacccaaacgctgatgagcctagggctctggcatctg 360
           |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tactagaaagtttggaagataatgacccaaacgctgatgagcctagggctctggcatctg 371

                                                                       
Query: 361 gtgacaacactgttggttatgatatcatgttgacaataatttttacaaaaaaagaataca 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 370 gtgacaacactgttggttatgatatcatgttgacaataatttttac-aaaaaagaataca 312

                                                                       
Query: 421 gatggccatacaggaaatgtaaatctgaggtagaggttagatatgttctctcatgagatc 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gatggccatacaggaaatgcaaatctgaggtagaggttagatatgttctctcatgagatc 252

                                                              
Query: 481 tcacccccaagaattaatatttactccagagcctggcaccttacatcatcc 531
           | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 251 ttacccccaagaattaatatttactctagagcctggcaccttacatcatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space:   480762
Effective search space used:   480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)