BAC Information

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BAC

Clone NameMSMg01-369L10
Chromosome16 (Build37)
Map Location 84,167,255 - 84,167,726
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572
Downstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369L10.T7 (MSMg01no369_l10.b1)MSMg01-369L10.TJ (MSMg01no369_l10.g1)
ACCAG476633AG476634
length751758
length of high quality
(start - end)		472 (58 - 529)551 (78 - 628)
definitionCHROMAT_FILE: MSMg01no369_l10.b1 PHD_FILE: MSMg01no369_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:31 2005CHROMAT_FILE: MSMg01no369_l10.g1 PHD_FILE: MSMg01no369_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATCC
TTAGCCAATAGCTAATCAACTTTTAAATTCTATGCCACAAACTACTATAT
GAAAACAGAGTATCACTTTGTATCATGTGTACAGGATAATATTGAGTGTT
TAGTAATCTCCAGTCATTTGGGTACTACACGTAATTTATTATTTTAATAA
ATATTCTTGGTGGAAAAAAAGTAGCAAACTTTATTATGTAGCACTCTTGA
CACATGTAAAGGTTATTAGAAAGCAGTCTAAAATGTAACCTGCATCTGGA
CCACATATTTCTCTCTCAAATCAGGTTTTCTGAGTAGAAAAAAAGACAAA
GTTGAATCCATAGACTGGTTGATAAGAAGTTTCCCAGATGTTTCCTTTAC
ATGATTAAATATTTGATCATGATGTTATGAAGAAATAGAACATCCTTTAT
TACAAGCTTCAGAGGAAAGGAAACTGTTCAATCAGGTATTTAAATGGGTT
TAAATGTCATGTTTTATTTCCATTTAATATGGGCTTATTCACAATTGAGT
GAGTCTAAACTGCTCCTGGGAAACTTATCTTATAATAAATGAATATATGA
ATATTTTTTATCTACCCAGATCCATAAGAATGTTGTTTAGTGTACTTTTT
ATGTTTGCTTTGTGGATTATTAAAGAATCGGAATTTTGACCTTGTTTATT
TTTATTTTATTTCTCTCTTTTTTTAACTCTTCACATTTATCTCTTTTTCC
C

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATA
AAAGCAGTCTACAGAAAACCAGTAGCCAACATCAAAGTAACTGGTGAGAA
GCTGGAGGCAATCCCACTAAAATCAGGGGCTAGACAAGGCTGCCCACTTT
CTCCCTACCTATTCAACATTGTACGTGAAGTCCTAGCCAGAGCAATTCGA
CAACTAAAGGAGATCAAGGGGATACAAATTGGAAAAGAAGAAGTCAAAAT
ATCACTTTTTGCAGATGATATGATAGTTTATATATGTGACACTAAAAATT
CCACCAGAGAACTCCTAAACCTGATAAAGAACTTCAGTGAAATAGCTGGA
TATAAAATTAACTCAAACAAGTCAATGGCCTTTCTGTACAGAAAGGATAA
AGAGTCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAA
ATAATATTAAATACCTTGGCATGACTCTAACAAAGGAAGTGAAAGATCTG
TATGATAAGAACATCAAGTCTCTGAAGAAAAAAATTAAAGAAGATCTTTG
AAGGTGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATAAAATAG
AAATGGCTATCTTGCCCAAAGCAATCTACCGATTCAGTGAAATCCCCATC
AAAATTCCACCTCAATTCTTCATTGAATTAAAAAGGGCATTCCGCAAACT
CCTCCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_l10.b1 MSMg01no369_l10.b1 CHROMAT_FILE:
MSMg01no369_l10.b1 PHD_FILE: MSMg01no369_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:31 2005
         (472 letters)



>mm_chr16_84166907_84167779
          Length = 873

 Score =  859 bits (444), Expect = 0.0
 Identities = 465/472 (98%), Gaps = 1/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tagctaatcaacttttaaattctatgccacaaactactatatgaaaacagagtatcactt 61
           |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 820 tagccaatcaacttttaaattctatgccacaaattactatatgaaaacagagtatcagtt 761

                                                                       
Query: 62  tgtatcatgtgtacaggataatattgagtgtttagtaatctccagtcatttgggtactac 121
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tgtatcatgtgtacaggatagtattgagtgtttagtaatctccagtcatttgggtactac 701

                                                                       
Query: 122 acgtaatttattattttaataaatattcttggtg-gaaaaaaagtagcaaactttattat 180
           ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||
Sbjct: 700 acgtaatttattattttaataaatattcttggtgaaaaaaaaagtagcagactttattat 641

                                                                       
Query: 181 gtagcactcttgacacatgtaaaggttattagaaagcagtctaaaatgtaacctgcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtagcactcttgacacatgtaaaggttattagaaagcagtctaaaatgtaacctgcatct 581

                                                                       
Query: 241 ggaccacatatttctctctcaaatcaggttttctgagtagaaaaaaagacaaagttgaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggaccacatatttctctctcaaatcaggttttctgagtagaaaaaaagacaaagttgaat 521

                                                                       
Query: 301 ccatagactggttgataagaagtttcccagatgtttcctttacatgattaaatatttgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccatagactggttgataagaagtttcccagatgtttcctttacatgattaaatatttgat 461

                                                                       
Query: 361 catgatgttatgaagaaatagaacatcctttattacaagcttcagaggaaaggaaactgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 catgatgttatgaagaaatagaacatcctttattacaagcttcagaggaaaggaaactgt 401

                                                               
Query: 421 tcaatcaggtatttaaatgggtttaaatgtcatgttttatttccatttaata 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcaatcaggtatttaaatgggtttaaatgtcatgttttatttccatttaata 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space:   398706
Effective search space used:   398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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