BAC Information

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BAC

Clone NameMSMg01-369P16
Chromosome16 (Build37)
Map Location 59,625,369 - 59,625,824
singlet/doubletsinglet
Overlap geneArl6
Upstream geneE330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884
Downstream geneEpha6, LOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369P16.T7 (MSMg01no369_p16.b1)MSMg01-369P16.TJ (MSMg01no369_p16.g1)
ACCAG476835AG476836
length766754
length of high quality
(start - end)
430 (65 - 494)456 (77 - 532)
definitionCHROMAT_FILE: MSMg01no369_p16.b1 PHD_FILE: MSMg01no369_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:52 2005CHROMAT_FILE: MSMg01no369_p16.g1 PHD_FILE: MSMg01no369_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATGTCACTAAACGACTCACTATTCCGAGAGGATCCGCGGAATTCCA
TGATTGTCGCACCCACTGTCGTACTTCTCTGGCTGTGAAATGAGTTCCTT
GGTCAGAAGCAATACTGTGTGGAATACCATGACGATAGATGAGGCATTCT
GTCAATCCGTGAATGGTGGTTTTGGCAGAGGCATTACGTGCAGGAAAGGC
AAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAAACGCTGTC
CTTTCCACGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAGGTTGCT
GGCTGGTCACCTCTAGGAATGGTGCCATATCTGGGGCTCAGTGTTGGTTT
CTGCTGTTGGCAGATCTGGCAATCAGCAGCAGCTGTAGCCAGGTCAGCTT
TGGTGAGTGGAAGCCCATGTTGCTGAGCCCAAGCATAACCTCCATCTCGA
CCACCATGGCCACTTTGTTCATGTGCCCATTGAGCAATGACAGGGATGGC
TGGGGAGAGAGGCTTGACTGTCCACAGAACGTGTCATCTTATCCACTTGA
TTATTGAACTCCTCCTCGGCTGAATTCTCCTTTCGCCGAGCATTTATTTG
GTACCCTATAACCCTCACCTCCCTTTGCCTCATTTGGAAAAACCCTTCTC
ATATATTTTCTTCCCCCAAGAGGTCCTTTCTCCCTCCATTTTTCCCACTA
CGGGAACCTTTTTCCAAATCCCCCCAACCTACCTAATCTTATCCCCTCTC
TATTTACTATCCTACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATTTATACAAGTAATTTTGA
GCCCAAGTTGTTTTAAAAACTGCAATTAGGACTCTGTAAACCTTTGTGTG
TCATGGGCTAATTTCACTAGAATAGAAAGCAGGCTTGGAACAGATTTGCA
ATCAGAGAAGGCATTCCTTCTGGGCTGGCTCTGAAACCATTGTCTGATAA
CTAAGTTTGTAAGCTGGGAGTAGCCAGTTTCTTGTGGGTGCAAGGATTGA
AGATGAAGTGTTCAATGGATAAAACTTTAAAACTAGTGAGACACTAGGCA
GATGATTTGCCTCTTGACAAAACCATGCTCAAATTAAGACATAAGAATTA
TTGTTTTCTCCAGACCTCATGTCTCTAGCTGCATATGTAGCAGAAGATGG
CCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTAGGTCTTGCAAACTTTA
TATGCCCCAGTACATGGGAATGCCAGGGACAAGAAGTGGTAGTGGGTGGT
TAGGGTAGCTGGTCGATCCTATTATTTAAGGAACTTCCATGATAGCATTT
TGAATGCTTATTTATATTAATATTTTTAATATCATATTTTTTCATTTACA
CCACTCATTTTTGTCCCTTTTCTGTCATGATACGTCTGTCACCTTCTACA
GATCACTTACGGCTTTTTTTTTCCCCCCCTTTCTTTCGCTATCCCTTGGT
ATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_p16.g1 MSMg01no369_p16.g1 CHROMAT_FILE:
MSMg01no369_p16.g1 PHD_FILE: MSMg01no369_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:52 2005
         (456 letters)



>mm_chr16_59625294_59626149
          Length = 856

 Score =  874 bits (452), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaatttatacaagtaattttgagcccaagttgttttaaaaactgcaattaggactctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 531 ctaaatttatacaagtaattttgagcccaagttgttttaaaaactgcagttaggactctg 472

                                                                       
Query: 61  taaacctttgtgtgtcatgggctaatttcactagaatagaaagcaggcttggaacagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 taaacctttgtgtgtcatgggctaatttcactagaatagaaagcaggcttggaacagatt 412

                                                                       
Query: 121 tgcaatcagagaaggcattccttctgggctggctctgaaaccattgtctgataactaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgcaatcagagaaggcattccttctgggctggctctgaaaccattgtctgataactaagt 352

                                                                       
Query: 181 ttgtaagctgggagtagccagtttcttgtgggtgcaaggattgaagatgaagtgttcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttgtaagctgggagtagccagtttcttgtgggtgcaaggattgaagatgaagtgttcaat 292

                                                                       
Query: 241 ggataaaactttaaaactagtgagacactaggcagatgatttgcctcttgacaaaaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggataaaactttaaaactagtgagacactaggcagatgatttgcctcttgacaaaaccat 232

                                                                       
Query: 301 gctcaaattaagacataagaattattgttttctccagacctcatgtctctagctgcatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gctcaaattaagacataagaattattgttttctccagacctcatgtctctagctgcatat 172

                                                                       
Query: 361 gtagcagaagatggcctagtcagccatcattgggaagagaggcccctaggtcttgcaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gtagcagaagatggcctagtcagccatcattgggaagagaggcccctaggtcttgcaaac 112

                                               
Query: 421 tttatatgccccagtacatgggaatgccagggacaa 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 111 tttatatgccccagtacatgggaatgccagggacaa 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)