BAC Information

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BAC

Clone NameMSMg01-370H06
Chromosome16 (Build37)
Map Location 68,988,942 - 68,989,258
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream geneSpeer2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370H06.T7 (MSMg01no370_h06.b1)MSMg01-370H06.TJ (MSMg01no370_h06.g1)
ACCAG477198AG477199
length765756
length of high quality
(start - end)
337 (41 - 377)391 (74 - 464)
definitionCHROMAT_FILE: MSMg01no370_h06.b1 PHD_FILE: MSMg01no370_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:31 2005CHROMAT_FILE: MSMg01no370_h06.g1 PHD_FILE: MSMg01no370_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACGGTTGATCTTTGAGCTATATATCTCTTGCATTCATTTTTTTCATCTC
CTACTAGATAGTAGACTCTTTAAGGAGAGAGATTGTGTCTAGTACCTTCA
TTACACAGGATGGAGCCTTGCACATTGTAGTGCTAAAATGATAACTTTTG
AGAGAGAACAGAAGAGCTTAATCACTAAGCCTGGCAGGTTGTGCTACACA
CATTGCTCATGTTTCCATTCTGATTATCCCATGAAAAGGTTTTAAAAGTA
AACACTCTTTGCAAAACAATGTTAAGCTGTTAAACGGTTGGTACTTTTTA
AAAAATGCCGTGAGCTTTCTAAGTCTGTCATCTGACAGTAACACTACCAT
CAGATTTGTTGTCTCTTACCTCCAGCAGGCTAGTCCAAAGGCCATGACTC
TACATAAACCGCGAAAGACAACTCGCCCTTCTGACATATAAATATTGTTA
ATTTCTCCCCTGTGTTGTGTTTTGTTAACTGATTCATAACCCTCGACTCT
ATTTGCAGCCTATCCCTTCTTTTTTACCCCCTTTGTCCTTCGTCCTTTCC
TGTTTCCCCACATTTTTTCATCTTTTTTCAATTTTTACCTTTCTGTACCC
CTTTTTTTGCTTATATATTTCCTCTTCGTACCTTTTGATTTCGTTCCCCT
CGTCCTTTGCTCCTTGGTTCTTATCTTGTTCTTTTCCTCGTGTACTACTC
TCATCTACTCTATCG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGATGTTAAACTCCAGAGAATCAAAT
AAATAATCTTCTTAAAATTGGGGTACAGAGCTAAACAAAAAATTTTCAAC
TGAGGAATACCAAATGACTGAGAAGCACTTAAAGAAATGTTCAACATCCT
TAGTCATCAGGGAAATGCAAATCAAACAATCCTGAGATTCCACCTCACAC
CACTCAGAATGGCTAAAATAAAAAACTCAAGTGACAGCAGATGCTGGGGA
GGACATGGAAAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCC
TGTACAACCACTCTGGAAATCAGTTTAGCGGTTCCTCAGAAAGTTGGTCA
TAGTATTACCAGAGGACCCAGCTATCCCACTACTGGGCATATATCCATAA
GATGCTCAAACTTATAATAAGGACACATGCACTACTATGTTCATAGGAGC
CTTATTTATAATAGCCAGGAGCTGGACAGAATCCCTATGTCCTTTCTTCT
AAGAATGTATTCCGCATAGTTGGTACCTTTTTATAACGGGGTACTGATCT
ACCTCGCTTTACGCATTTTTTTACCTTCCCCGGTTCATGGCTTTTTTTTT
TTTCGCTTTTCCGCATTTCGGTTTCCCTTCCTTTTTATAACCTTTGGTCT
TTTTCTACTCTCTTTATTGCGTACTCTTTTTTTATTTATTTTCTTCTCCC
CTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_h06.b1 MSMg01no370_h06.b1 CHROMAT_FILE:
MSMg01no370_h06.b1 PHD_FILE: MSMg01no370_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:31 2005
         (337 letters)



>mm_chr16_68988772_68989510
          Length = 739

 Score =  551 bits (285), Expect = e-161
 Identities = 311/325 (95%), Gaps = 10/325 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacggttgatctttgagctatatatctcttgcattca--tttttttcatctcct 62
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 487 gaattctacggttgatctttgagctatatatctcttgcattcatttttttttcatctcct 428

                                                                       
Query: 63  actagatagtagactctttaaggagagagattgtgtctagtaccttcattacacaggatg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actagatagtagactctttaaggagagagattgtgtctagtaccttcattacacaggatg 368

                                                                       
Query: 123 gagccttgcacattgtagtgctaaaatgataacttttgagagagaacagaagagcttaat 182
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 367 gagccttgcacattgtagtgctacaatgataacttttgagagagaacagaagagtttaat 308

                                                                       
Query: 183 cactaagcctggcaggttgtgctacacacattgctcatgtttccattctgattatcccat 242
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 307 cactaagcctggcaggttgtgctacacacattgctcatgttttcattctgattatcccat 248

                                                                       
Query: 243 gaaaaggttttaaaagtaaacactctttgcaaaacaatgttaagctgttaaacggttggt 302
           |||||||||||||||||||||||||||||||||||||||||||        |||||||||
Sbjct: 247 gaaaaggttttaaaagtaaacactctttgcaaaacaatgttaa--------acggttggt 196

                                    
Query: 303 actttttaaaaaatgccgtgagctt 327
           ||||||||||||||||| |||||||
Sbjct: 195 actttttaaaaaatgccatgagctt 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 739
Length adjustment: 9
Effective length of query: 328
Effective length of database: 730
Effective search space:   239440
Effective search space used:   239440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)