Query= MSMg01no370_h17.b1 MSMg01no370_h17.b1 CHROMAT_FILE:
MSMg01no370_h17.b1 PHD_FILE: MSMg01no370_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:33 2005
(534 letters)
>mm_chr16_42326722_42327655
Length = 934
Score = 1017 bits (526), Expect = 0.0
Identities = 529/530 (99%)
Strand = Plus / Minus
Query: 5 gaattctcattcttctttcagaagccagagttatatcttaaaaagtgccttttgaaatgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaattctcattcttctttcagaagccagagttatatcttaaaaagtgccttttgaaatgt 675
Query: 65 gtgtttctgacatgtttcctctgtccctacaatcaaaccaaatgcataattactgaggcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtgtttctgacatgtttcctctgtccctacaatcaaaccaaatgcataattactgaggcc 615
Query: 125 ttttaaactgcttcctacccaggcttttatttctctggtttcttaaattcattctcctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttttaaactgcttcctacccaggcttttatttctctggtttcttaaattcattctcctct 555
Query: 185 tggtcactcaatcttttgacttccttttaatttataagacacatcaagagtggcttctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tggtcactcaatcttttgacttccttttaatttataagacacatcaagagtggcttctct 495
Query: 245 cgcagcagtttgtatatgttgatctccaggccaagaattctctttccactctttactgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cgcagcagtttgtatatgttgatctccaggccaagaattctctttccactctttactgaa 435
Query: 305 agggttattcccctctgtctgagttattttggaaacaccacatttcttctgtttttaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agggttattcccctctgtctgagttattttggaaacaccacatttcttctgtttttaaga 375
Query: 365 ctgctcaaagtctgaatcagaagaaagatttgttaactttcttgttttcaatgtttttaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctgctcaaagtctgaatcagaagaaagatttgttaactttcttgttttcaatgtttttaa 315
Query: 425 ttacctttcatacttccaagctatctcatttatatcatagactgtattgcaattctgtgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttacctttcatacttccaagctatctcatttatatcatagactgtattgcaattctgtgg 255
Query: 485 tctcaaacaatgatgtccaccattttatcaaccctttcttcctttctaaa 534
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254 tctcaaacaatgatgtccatcattttatcaaccctttcttcctttctaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_h17.g1 MSMg01no370_h17.g1 CHROMAT_FILE:
MSMg01no370_h17.g1 PHD_FILE: MSMg01no370_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:33 2005
(143 letters)
>mm_chr16_42160044_42160584
Length = 541
Score = 259 bits (134), Expect = 5e-74
Identities = 140/142 (98%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 1 agtttagatcttggaaacagaaagcgaggagtaaagccaaagagagagggaagaaagcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttagatcttggaaacagaaagcgaggagtaaagccaaagagagagggaagaaagcga 260
Query: 61 accctctagagatctacccaaccctttgcatttaatccttttttagcaattcaaatagat 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctctagagatctacccaacc-tttgcatttaatccttttttagcaattcaaatagat 319
Query: 121 gaaggggcaaaaaaacattatt 142
|||||||||||||| |||||||
Sbjct: 320 gaaggggcaaaaaa-cattatt 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 541
Length adjustment: 8
Effective length of query: 135
Effective length of database: 533
Effective search space: 71955
Effective search space used: 71955
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
