Query= MSMg01no371_d01.b1 MSMg01no371_d01.b1 CHROMAT_FILE:
MSMg01no371_d01.b1 PHD_FILE: MSMg01no371_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:31 2005
(357 letters)
>mm_chr16_90169838_90170595
Length = 758
Score = 632 bits (327), Expect = 0.0
Identities = 352/363 (96%), Gaps = 6/363 (1%)
Strand = Plus / Minus
Query: 1 caggaagcagataagttgcctggttgaagctcctttctcctagctctggaccaacgctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caggaagcagataagttgcctggttgaagctcctttctcctagctctggaccaacgctat 627
Query: 61 cagccataattaatgggaagtagctaatttcatcagtc-----ttttttttttttttttt 115
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 626 cagccataattaatgggaagtagctaatttcatcagtctttttttttttttttttttttt 567
Query: 116 ttttttggaggcacggttttctaaccaaaatacaccctgagcattgttcagctcagcgtt 175
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttttttgtaggcacggttttctaaccaaaatacaccctgagcattgttcagctcagcgtt 507
Query: 176 gctatgagacaggggctatttattcctccgttttgttttcctaagactcttacatagctc 235
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 506 gctatgagacagcggctatttattcctccgttttgttttcctaagactcttacgtagctc 447
Query: 236 tggtgacgggacttcccagagctgcaccatctctcctcttatctcttattttagaaaggt 295
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggtgacggcacttcccagagctgcaccatctctcctcttatctcttattttagaaaggt 387
Query: 296 aaccataagacccc-atcaattgtaggatgtggccggtagacatcagagtatcagatggg 354
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaccataagtcccccatcaattgtaggatgtggccggtagacatcagagtatcagatggg 327
Query: 355 gaa 357
|||
Sbjct: 326 gaa 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 758
Length adjustment: 9
Effective length of query: 348
Effective length of database: 749
Effective search space: 260652
Effective search space used: 260652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_d01.g1 MSMg01no371_d01.g1 CHROMAT_FILE:
MSMg01no371_d01.g1 PHD_FILE: MSMg01no371_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:31 2005
(494 letters)
>mm_chr16_89973168_89974060
Length = 893
Score = 932 bits (482), Expect = 0.0
Identities = 491/494 (99%), Gaps = 1/494 (0%)
Strand = Plus / Plus
Query: 1 agaacacttattatcgcctcccagagcctgcttccccacaaggacctcatccacctttcg 60
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacacttatcat-gcctcccagagcctgcttccccacaaggacctcatccacctttca 259
Query: 61 gggccagatgcagcctgtgggaagcatgggcaagggtttgttacaaagctccgtcacgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gggccagatgcagcctgtgggaagcatgggcaagggtttgttacaaagctccgtcacgtg 319
Query: 121 agtcatcacggcgtctaccagagatgcgtggagaagatatggaacctgagcgagccaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtcatcacggcgtctaccagagatgcgtggagaagatatggaacctgagcgagccaagt 379
Query: 181 tgggtaatgagcaagacgatgagtaacgccctggtaggaagtgggtgaatgtgttctctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgggtaatgagcaagacgatgagtaacgccctggtaggaagtgggtgaatgtgttctctg 439
Query: 241 ggcctgttcactaaagcaaggtctgcaagagccagctcacaggctggcgggtaaggctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcctgttcactaaagcaaggtctgcaagagccagctcacaggctggcgggtaaggctgg 499
Query: 301 gtcgctcggtggctactttatactgacctatttgcaacaactgcctcatgtcctgatgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtcgctcggtggctactttatactgacctatttgcaacaactgcctcatgtcctgatgct 559
Query: 361 gcatttcctgcacgcaatgagcagaatctctattcaaccatctcagacactctcagactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcatttcctgcacgcaatgagcagaatctctattcaaccatctcagacactctcagactt 619
Query: 421 cccagagaaacaaggcaggcggcccacacaaggagggggctggtggtatgccattcctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cccagagaaacaaggcaggcggcccacacaaggagggggctggtggtatgccattcctgg 679
Query: 481 tgcaggtcctagga 494
||||||||||||||
Sbjct: 680 tgcaggtcctagga 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space: 427372
Effective search space used: 427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
