Query= MSMg01no372_a02.b1 MSMg01no372_a02.b1 CHROMAT_FILE:
MSMg01no372_a02.b1 PHD_FILE: MSMg01no372_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:40 2005
(487 letters)
>mm_chr16_52033275_52034161
Length = 887
Score = 791 bits (409), Expect = 0.0
Identities = 462/487 (94%), Gaps = 13/487 (2%)
Strand = Plus / Plus
Query: 1 tttatttttttattactctttctaacttattatcttgcttttcaagttccagagcccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatttttttattactctttctaacttattatcttgcttttcaagttccagagcccctg 260
Query: 61 ggtattactccaatatgcagtttataccattggctacttttgctgggtgtatagtatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtattactccaatatgcagtttataccattggctacttttgctgggtgtatagtatggt 320
Query: 121 ttggaagtttgcttagtcttacgtggagttgccttgctactagataatagaaggctaaca 180
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ttggaagtttgcttagtcttatgtggagttgccttgctactagataatataaggctaaca 380
Query: 181 agtgaacaataggctctgctggagcacacttaggacaagcacgtgggtgatgttgaaacc 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 agtgaacaataggctctgctggagcacacttaggacaagcacatgggtgatgttgaaacc 440
Query: 241 tttactggggaaagaatcaggactccagggaggaagcagtattgaagagtttggttttta 300
|||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||
Sbjct: 441 tttactggggaaagaaccagaactccagggaggattcagtattgaagagtttgattttta 500
Query: 301 tccctgtaagctcatctttattaagaaaatatatacatatatacatatatatgtatacat 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccctgtaaactcatctttattaagaaaatatatacatatatacatatatatgtatacat 560
Query: 361 atatatgtatacatatatatgtatatgtatatatatatatatgtatagtctttactgttg 420
|||||||||| |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 561 atatatgtat----------gtatatatatatatatatatatatatagtctttactgtt- 609
Query: 421 ttcaggacatcggtacagtttctttcatctatgattccatttttaaacagggaacctttt 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 610 --caggacatcggtacagtttctttcatctatgattccattttgaaacagggaacctttt 667
Query: 481 tggttgt 487
|||||||
Sbjct: 668 tggttgt 674
Score = 89.7 bits (46), Expect = 4e-22
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 329 atatatacatatatacatatatatgtatacatatatatgtatacatatatatgtatat-- 386
||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 596 atatatatatatatatatatatatacatacatatatatgtatacatatatatgtatatat 537
Query: 387 gtatatat 394
||||||||
Sbjct: 536 gtatatat 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_a02.g1 MSMg01no372_a02.g1 CHROMAT_FILE:
MSMg01no372_a02.g1 PHD_FILE: MSMg01no372_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:40 2005
(452 letters)
>mm_chr16_52182775_52183626
Length = 852
Score = 851 bits (440), Expect = 0.0
Identities = 449/452 (99%)
Strand = Plus / Minus
Query: 1 agggacacaggatgggatgaaggaatcttgtattcatcgtcatcatcttctaccgtgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agggacacaggatgggatgaaggaatcttgtattcatcgtcatcatcttctaccgtgtct 593
Query: 61 ctagttttctctgagagacaatttgctaatggaccagtacacctaccaagagggaagaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 592 ctagttttctctgagagacaatttgctaatggaccagtacacctaccaagagggaaaaga 533
Query: 121 aaatccaatctggtttaagcatcataaataccagagcaggaaggtctgatgtgacataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaatccaatctggtttaagcatcataaataccagagcaggaaggtctgatgtgacataga 473
Query: 181 acaatgaagaaactgctttgtcactggaagttttcaactgtaaactgttcttacatccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acaatgaagaaactgctttgtcactggaagttttcaactgtaaactgttcttacatccaa 413
Query: 241 tagaaatggaaggtcttgaaatgttaagataagatattcatacctgtggtttttaagggt 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tagaaatggaaggccttgaaatgttaagataagatattcatacctgtggtttttaagggt 353
Query: 301 gaactaagaaaaaaatgaaaattacgaaaatgaaagggttttataaataaagctttaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaactaagaaaaaaatgaaaattacgaaaatgaaagggttttataaataaagctttaaca 293
Query: 361 aaagatgtgtacaattattcaagtccaagctattaaaatgttaattgctccctcccatgt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 taagatgtgtacaattattcaagtccaagctattaaaatgttaattgctccctcccatgt 233
Query: 421 actggaaatcagcaaaagtgataaggatacac 452
||||||||||||||||||||||||||||||||
Sbjct: 232 actggaaatcagcaaaagtgataaggatacac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
