BAC Information

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BAC

Clone NameMSMg01-372D20
Chromosome16 (Build37)
Map Location 33,980,163 - 34,126,000
singlet/doubletdoublet
Overlap geneKalrn, LOC100043670
Upstream geneLrch3, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps
Downstream geneRopn1, Ccdc14, Mylk, Ptplb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372D20.T7 (MSMg01no372_d20.b1)MSMg01-372D20.TJ (MSMg01no372_d20.g1)
ACCAG478549AG478550
length774777
length of high quality
(start - end)		439 (67 - 505)388 (67 - 454)
definitionCHROMAT_FILE: MSMg01no372_d20.b1 PHD_FILE: MSMg01no372_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:56 2005CHROMAT_FILE: MSMg01no372_d20.g1 PHD_FILE: MSMg01no372_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:56 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(33,980,163 - 33,980,601)(34,125,613 - 34,126,000)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTG
TTTCCTAAGGAAAATGATGCTTGCTGTCTCCTAGGAAACAAAGGTCTGGG
GTCACTGGAATGCTGACTCATAGGATAATCAAAAAGAAACCTAAAGTAAA
TGCCTGAATTGATCTGTAAACAAAAAGACAGGTCTTTGGTCCTCTTGGTT
TGTATGAGATGAGGTAAGCAGAGTGTGACAGAAGTTCTTTAGAATTTTCT
CTCTCAAGGGCTGAGCTGTCCGAAATCTCTGGAGAGCAAAAACAGCTCTT
CAACAATTTTTTTTCTAACAGGATTTCTGACTTGGATGAAAGATCCAATA
ATTTTTTTTATAGCAGCTTTTCTGACTTTGGTTAGAAAATTTATGAACTA
TCCCGGTTGCTTGTAGAATTTCTACTAGCAGAGAGAGCTGTCTCAACCAG
AAAATTTTTTTTAAAAAGGAAGACAATGCTGAAAACACACACACACACAC
ACACACACACATTTACACACACATTCACACACGTTAACACACACACCCAC
TCTTCCATCACTCTTACATTTTTCACTCATTTTCCCGCTACATATTCATA
TTCTCATACACACACCCTCCTTTTACATCCTTATCCTTTCTCTCTTTCAC
CCATCTGTAATATGCCTTTTCCTTACAAACTAAAATTTTTCTTCTTTGAA
CCTCCAATTTTATCTCCCGTTATTCTTGATCTCCCCATTCTAACCCCCCG
TTTTTACATATTGATTTTTTTCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTCCCAAGAAACAGTAAACACCTGGTACCCACC
AGCTGTGATACACAATGGCTTCCTTGTGGTTTCTGCCTGAACTAGAAGTG
TACTTCAGCTGGGCAGGAGGACTCTCTTGAGAGCCTGCCGTCTGCTAAGC
AAGTTGGTGGTTTCCTTTTCTAACTCCTAGCCGTTGCTGCTCTCTAGTGG
CCAACAGTGCCTGCAAAGTCGGTCCAAATAGTAAGGACAGGAGGGGAAGG
TGGAGCTGCACTTTATAGGCACAGAGACTAGGGAGCAGTAGCCAAGGGTA
TCTAGAGGGTGTGTGGCTGTACATGCAGAATGGAGCAGGAGGGGAGATGG
GGTGATCAGAAAGGGTCATCTCGTGAGCCACAGCTGAACATCTGAGGCTT
GATCGTATTCTGCATCGTGAAAACTATCACTTCCGGTCTTTGGCCTGCTT
TCCTCCGATGTTCCCCTCTCTAGTGTCTTTATGACGCAGAACCCTTTGTT
CCCCCGTCCGCTAGAATTCCCACACCCTCCCCCCTTTTGTCCTTCCCCCC
CATCTCCTTTTTTTTTTTATCCTTGTTTATTCGTTTTCCCTTAATCCCTT
TTCCTACCCCTATTTTTTCTTCCCTTTTTCTGCTTCTTCTGTCCCCTTTT
TTTCCACCTTTTTTTTTTTCTTTCTTGCGCTCCCCCCCCTTATTCCCCCC
CTTTTCTATTATCTCTTCTCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_d20.b1 MSMg01no372_d20.b1 CHROMAT_FILE:
MSMg01no372_d20.b1 PHD_FILE: MSMg01no372_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:56 2005
         (439 letters)



>mm_chr16_33979963_33980801
          Length = 839

 Score =  779 bits (403), Expect = 0.0
 Identities = 430/439 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcttgctgtctcctaggaaacaaaggtctggggtcactggaatgctgactcataggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcttgctgtctcctaggaaacaaaggtctggggtcactggaatgctgactcataggat 260

                                                                       
Query: 61  aatcaaaaagaaacctaaagtaaatgcctgaattgatctgtaaacaaaaagacaggtctt 120
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 aatcaaaaggaaacctaaagtaaatgcctgaattgatctgtaaacaaaaagacaggcctt 320

                                                                       
Query: 121 tggtcctcttggtttgtatgagatgaggtaagcagagtgtgacagaagttctttagaatt 180
           ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 321 tggtcctcttggtctgtatgagatgaggtaggcagagtgtgacagaagtgctttagaatt 380

                                                                       
Query: 181 ttctctctcaagggctgagctgtccgaaatctctggagagcaaaaacagctcttcaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctctctcaagggctgagctgtccgaaatctctggagagcaaaaacagctcttcaacaa 440

                                                                       
Query: 241 ttttttttctaacaggatttctgacttggatgaaagatccaataattttttttatagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttttttctaacaggatttctgacttggatgaaagatccaataattttttttatagcag 500

                                                                       
Query: 301 cttttctgactttggttagaaaatttatgaactatcccggttgcttgtagaatttctact 360
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 501 cttttctgactttggttagaaaatttatgaactatctcggtttcttgtagaatttctact 560

                                                                       
Query: 361 agcagagagagctgtctcaaccagaaaattttttttaaaaaggaagacaatgctgaaaac 420
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 561 agcagagagagctgtctcaaccagaaaaattttttaaaaaaggaagacaatgctgaaaac 620

                              
Query: 421 acacacacacacacacaca 439
           |||||||||||||||||||
Sbjct: 621 acacacacacacacacaca 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_d20.g1 MSMg01no372_d20.g1 CHROMAT_FILE:
MSMg01no372_d20.g1 PHD_FILE: MSMg01no372_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:56 2005
         (388 letters)



>mm_chr16_34125413_34126200
          Length = 788

 Score =  712 bits (368), Expect = 0.0
 Identities = 383/388 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcccaagaaacagtaaacacctggtacccaccagctgtgatacacaatggcttccttg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 588 cttcccaagaaacagtaaacacctggtacccaccagctgtgatgcacaatggcttccttg 529

                                                                       
Query: 61  tggtttctgcctgaactagaagtgtacttcagctgggcaggaggactctcttgagagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tggtttctgcctgaactagaagtgtacttcagctgggcaggaggactctcttgagagcct 469

                                                                       
Query: 121 gccgtctgctaagcaagttggtggtttccttttctaactcctagccgttgctgctctcta 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gccatctgctaagcaagttggtggtttccttttctaactcctagccgttgctgctctcta 409

                                                                       
Query: 181 gtggccaacagtgcctgcaaagtcggtccaaatagtaaggacaggaggggaaggtggagc 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtggccaacagtgcctgccaagtcggtccaaatagtaaggacaggaggggaaggtggagc 349

                                                                       
Query: 241 tgcactttataggcacagagactagggagcagtagccaagggtatctagagggtgtgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 348 tgcactttataggcacagagactagggagcagtagccaagggtatctagagggtgtgtga 289

                                                                       
Query: 301 ctgtacatgcagaatggagcaggaggggagatggggtgatcagaaagggtcatctcgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 288 ctgtacatgcagaatggagcaggaggggagatggggtgatcagaaagggtcatcttgtga 229

                                       
Query: 361 gccacagctgaacatctgaggcttgatc 388
           ||||||||||||||||||||||||||||
Sbjct: 228 gccacagctgaacatctgaggcttgatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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