Query= MSMg01no372_j11.b1 MSMg01no372_j11.b1 CHROMAT_FILE:
MSMg01no372_j11.b1 PHD_FILE: MSMg01no372_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:22 2005
(267 letters)
>mm_chr16_85374716_85375383
Length = 668
Score = 445 bits (230), Expect = e-129
Identities = 258/272 (94%), Gaps = 9/272 (3%)
Strand = Plus / Minus
Query: 5 gaattctcctttgc-gacatttgagtctcttgtttcctgtctggattttagatgcaataa 63
|||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaattctcctttacagaccgttgagtctcttgtttcctgtctggattttagatgcaataa 377
Query: 64 aataacaggatatcctgagttaaggaatctcaaaacagaaagtatttcatacctcacaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aataacaggatatcctgagttaaggaatctcaaaacagaaagtatttcatacctcacaaa 317
Query: 124 agtgtaatctaataaagaaaaaaaattcagtaatttccatgactagataatggctttgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 316 agtgtaatctaataaagaaaaaaaattcagtaatttccatgactagataattgctttgat 257
Query: 184 aatgcctgtcatttttttgtagattgattcttagaatatagtcattt--------attca 235
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 256 aatgcctgtcatttttttgtagattgattcttagaatatagtcatttattcattcattca 197
Query: 236 ctatgcatttcttgacttattgatcgtcaact 267
|||||||||||| |||||||||||||||||||
Sbjct: 196 ctatgcatttctcgacttattgatcgtcaact 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 668
Length adjustment: 9
Effective length of query: 258
Effective length of database: 659
Effective search space: 170022
Effective search space used: 170022
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no372_j11.g1 MSMg01no372_j11.g1 CHROMAT_FILE:
MSMg01no372_j11.g1 PHD_FILE: MSMg01no372_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:22 2005
(413 letters)
>mm_chr16_85200050_85200862
Length = 813
Score = 735 bits (380), Expect = 0.0
Identities = 405/416 (97%), Gaps = 6/416 (1%)
Strand = Plus / Plus
Query: 1 attagcattgggaatcatgcaaaagctgaatctttaacacattttattgagtgtgcacta 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagcattaggaatcatgcaaaagctgaatctttaacacattttattgagtgtgcacta 260
Query: 61 agaatatgtgggctcagagaggtcagtgatttcaaatgtttaaaactggaaagggaaact 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatatgtgtgctcagagaggtcagtgatttcaaatgtttaaaactggaaagggaaact 320
Query: 121 gaacatcctagttttgccctaacaatcggagggtggaaggcacatctcctgggtcaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacatcctagttttgccctaacaatcggagggtggaaggcacatctcctgggtcaggtt 380
Query: 181 gtgcttctgtggcaggaggacaaaagattatgtaagcccagagaaccatggatggagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcttctgtggcaggaggacaaaagattatgtaagcccagagaaccatggatggagctg 440
Query: 241 ttttata---agcacgaaatggaaatacctactgctgagtcacacactggacaaagagtt 297
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 g---agacaaagcacgaaatggaaatacctactgctgagtcacacactggacaaagagtt 497
Query: 298 cctttcttatttctcaaaaggaaaagactagacattggaggtgccaatcatttattgatc 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cctttcttatttctcaaaaggaaaagactagacattggaggtgccaatcatttattgatt 557
Query: 358 caactagtatttagacagcacctcttatgtgctgaagctgagttctgttgctgcgg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caactagtatttagacagcacctcttatgtgctgaagctgagttctgttgctgcgg 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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