BAC Information

Click to search

BAC

Clone NameMSMg01-373I10
Chromosome16 (Build37)
Map Location 41,316,624 - 41,316,868
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp, Gap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373I10.T7 (MSMg01no373_i10.b1)MSMg01-373I10.TJ (MSMg01no373_i10.g1)
ACCAG479536AG479537
length733748
length of high quality
(start - end)
556 (60 - 615)249 (72 - 320)
definitionCHROMAT_FILE: MSMg01no373_i10.b1 PHD_FILE: MSMg01no373_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:30 2005CHROMAT_FILE: MSMg01no373_i10.g1 PHD_FILE: MSMg01no373_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTCACC
TGATGCACTACCAAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCC
TTAATCATCAGGGGAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGT
GACGATGTGGAGAAGGAGGAACACTCCTCCATTGTTGGTCAGATTGCAAG
CTTGTACAACTACTCTTGAAGTCAGTCTGGCAGTTCCTCAGAAAATTGGA
CATAGTACTACCGGATGATCCCGAAGTACCTCTCCTGGGCATATATCCAG
AAGATGTTCCAACAGGTAAGAAGGACACATTCTCCACTATGTTCATCGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGACCCTCAAG
AGAGGAATGGATACAGAAAATGTGGTACATTTACACACTGGAGTAGTACT
CAGCTATGAAAAAGGATGAATTTATGAAATTCCTAGGCAAATGGATGAAC
CTGGAGGGCTTCATCTTGAGTGAGGTAACCCAATCACAAAGGAACTCACA
CAATATGTACTCACTCATAAGTGGATATTAGCCCAGAAACTTAGGATACC
CAAGATATAAGATACATTTTGCTAACCGCTTGAAAATCCAGATGAACGAG
GACCAAGGTGTGGACACTTTGCCCATTCTTAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAATTCATTTTCTAAATCTTTTCCCCAGGCC
CTTCCTCTGTTTTCTGTCGTGTATCAAAGGAGTAAGCTTGGAAATATTTC
TTTTCATCATGTGCTTTCTCCTGCCTTGGCTTGCTTTGTGTTTCTCTGTG
TTGGCTTGTAAAAGGCTGAGAAACAGTCTTGTGATGAGAAAGGCTGGTAA
TATATAAACAGGGAAATCACAAGGATGAGGTGGTGAGAGTAAATGAGACC
CAGAGCTGAGCTGCAAGCAACTTTTTCTCTTCCCTCTGGATCATTTACTT
GCTTCCCCCCCCCCCCAAAGACATAGACCATTGCCTGTAGTTCAACTGCC
CTTCTCTTTCTTTCTGGNACTTACGTCTCACTAGCCATGCTTTCTCTTAC
ACCCGTTCTTTCCTGCATAGTCAGCTTTCTCTGCTCTTCTGTGAGGAACT
GTATGAATCTTGCTCTGCTCTTCCGTGAGAAACTCTATGACTCTTGCTCA
TTTGATAAAAGGATGGATGCTGCTTATCTTTTCCAATAAAACTAACAAAC
AATAAATGTTTCTTGAAAAAAGCATTTGCTTTTTTGTGTCCACAGTTTAA
AACAGTTCCTTGATCTTCCTGTTAATGCCCAACATTTTTTGCCATTTCCC
ATTTTCACTAATTAACAAAGCATCAAGGTGTCCTAAACACATATGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_i10.g1 MSMg01no373_i10.g1 CHROMAT_FILE:
MSMg01no373_i10.g1 PHD_FILE: MSMg01no373_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:30 2005
         (249 letters)



>mm_chr16_41316421_41317069
          Length = 649

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   cattttctaaatcttttccccaggcccttcctctgttttctgtcgtgtatcaaaggagta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cattttctaaatcttttccccaggcccttcctctgttttctgtcgtgtatcaaaggagta 263

                                                                       
Query: 64  agcttggaaatatttcttttcatcatgtgctttctcctgccttggcttgctttgtgtttc 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 agcttggaaatatttcttttcatcatgcgctttctcctgccttggcttgctttgtgtttc 323

                                                                       
Query: 124 tctgtgttggcttgtaaaaggctgagaaacagtcttgtgatgagaaaggctggtaatata 183
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 tctgtgttggcttgtagaaggctgagaaacagtcttgtgatgagaaaggctggtaataaa 383

                                                                       
Query: 184 taaacagggaaatcacaaggatgaggtggtgagagtaaatgagacccagagctgagctgc 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 384 gaaacagggaaatcacaaggatgaggtggtgagagtaaatgagacccagagccgtgctgc 443

                
Query: 244 aagca 248
           |||||
Sbjct: 444 aagca 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)