BAC Information

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BAC

Clone NameMSMg01-374B24
Chromosome16 (Build37)
Map Location 17,562,483 - 17,562,994
singlet/doubletsinglet
Overlap geneP2rxl1
Upstream geneOlfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik
Downstream geneSlc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374B24.T7 (MSMg01no374_b24.b1)MSMg01-374B24.TJ (MSMg01no374_b24.g1)
ACCAG479994AG479995
length800749
length of high quality
(start - end)		500 (49 - 548)512 (57 - 568)
definitionCHROMAT_FILE: MSMg01no374_b24.b1 PHD_FILE: MSMg01no374_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:15 2005CHROMAT_FILE: MSMg01no374_b24.g1 PHD_FILE: MSMg01no374_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAAGAACTTTATAAACATGTTCAACGATTTCAAAGCAGCTA
AAAAGAACACAGATAATCACCTGGTAAACGTAAGAGGCCATGAATGAAAT
TATTGAAGTGCAAGAAACATAAGCAGACAGCTGAGAGAAATAATGAGAAC
AATTCAGGAAATGAAATTCAAATTCAATAAAGAAATAAAATACTAAGGAA
AACACAAACTGAAGCAAGATATGAGAAACCTAGAAATCCTTATCTAAAGC
TCAGTTGAAAGCCTCATGAGCAGAATGGATTGGATAAGGACAGAATATCA
GGATCTGAACACAAGACAGAAGAACTGGATCGCTCAATCAAAGGAAACAA
AGAATGCAATGAATATAGGAACATTGAGACTCCATGAAAACACCAAACCT
GTGAATTGTGACAATTATTGGTGCGAAAGGAACAGTGTTTTAATAAAACC
ATAGGAGAAAAATTTGTAAATCAATAAAAAGTGAAACTTACCCAGACATA
AAAGTTCCACAAAATATCACATAAATATGGCCTGAAAAGAAACTTCCTGG
GTCTTCTCTTTTCTTAATGGGTATTTTATTTACATTTTCAAAGTTATCTC
CCCTTCCCCGAATTCCCTCCCAAAAACCCCGAACCTTCTTTCCCTTTCCC
ATGCCCCCAAGAAAGGGGGCCCCCCCAATAAACCCTTCTCTCCCTGGTCG
GGACCCTAAAAACTCCCCCAACCCCGGGGGGATTATATCTCCCCCCAAAA


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGACTTCCTGCAGCAGCGCTGGGGACCTACCTGTGATGGCTTCA
CAAAGTCAGCCACGTCCCACAGCCGGTTCTCCAGCTCCTTAACCTGGGTT
ACAGAAACCCCCTTGAGTTTGGTGATGACAGAAGTCTGAGGGGCCAAGTC
CCGTTCCTGGTAGCCTTTTTTGGCCAAGAGGGCCCACCTAGGGAAAGGAT
GATGGATAGTGTAATGTCCAGATAAGGAGTAGCAGTGCTCACACACTAGG
CTCCCAGACCAGCATGGAGGCCTCCACCTTCTGTCTAGCTGCGCCTCTTG
CTCTATACCCCTGAGCAAGTGGAGCTCTCAGATGACGATGGTCACTTTTC
ACAGCCAGTGCTTTCACACACTCAGCAAACCCAGCTCCCTTCTCAAAGAC
TTTTCGGACATCCAGCTGGTGGTCTCTCTGAGAGGCTTAGTGCTGTGTTG
CTCAGAGAATTACTGCCTCCTGCTGCATCAGGGTACCTTAGGGCAGGAGA
ACTGCAGACGCTAACAGAGACCGAGAAGACGCTGGAGACCAAGCCCCTTA
CGTGGGCGAATGGATCTTCCACTGTTCTCTGAAAGGACTAAATCCCTTCT
GACACCTCCTCACCCCATTTCCACTTTCCCCCCAGCTGGGGTTCTAAAAA
CCAACTTTTTTCCCTCGTTAGGAAAACCCCCCCAGCAGGTTTGTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_b24.g1 MSMg01no374_b24.g1 CHROMAT_FILE:
MSMg01no374_b24.g1 PHD_FILE: MSMg01no374_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:15 2005
         (512 letters)



>mm_chr16_17562283_17563194
          Length = 912

 Score =  959 bits (496), Expect = 0.0
 Identities = 508/512 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacttcctgcagcagcgctggggacctacctgtgatggcttcacaaagtcagccacgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tgacttcctgcagcagcgctggggacctacctgtgatggcttcacaaagtcagccacgtc 653

                                                                       
Query: 61  ccacagccggttctccagctccttaacctgggttacagaaacccccttgagtttggtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ccacagccggttctccagctccttaacctgggttacagaaacccccttgagtttggtgat 593

                                                                       
Query: 121 gacagaagtctgaggggccaagtcccgttcctggtagccttttttggccaagagggccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gacagaagtctgaggggccaagtcccgttcctggtagccttttttggccaagagggccca 533

                                                                       
Query: 181 cctagggaaaggatgatggatagtgtaatgtccagataaggagtagcagtgctcacacac 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 532 cctagggaaaggatgatggatagtgtaatgtctagataaggagtagcagtgctcacacac 473

                                                                       
Query: 241 taggctcccagaccagcatggaggcctccaccttctgtctagctgcgcctcttgctctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 taggctcccagaccagcatggaggcctccaccttctgtctagctgcgcctcttgctctat 413

                                                                       
Query: 301 acccctgagcaagtggagctctcagatgacgatggtcacttttcacagccagtgctttca 360
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 412 acccctgagtaggtggagctctcagatgacgatggtcacttttcacagccagtgccttca 353

                                                                       
Query: 361 cacactcagcaaacccagctcccttctcaaagacttttcggacatccagctggtggtctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cacactcagcaaacccagctcccttctcaaagacttttcggacatccagctggtggtctc 293

                                                                       
Query: 421 tctgagaggcttagtgctgtgttgctcagagaattactgcctcctgctgcatcagggtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tctgagaggcttagtgctgtgttgctcagagaattactgcctcctgctgcatcagggtac 233

                                           
Query: 481 cttagggcaggagaactgcagacgctaacaga 512
           ||||||||||||||||||||||||||||||||
Sbjct: 232 cttagggcaggagaactgcagacgctaacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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