BAC Information

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BAC

Clone NameMSMg01-374M10
Chromosome16 (Build37)
Map Location 12,528,164 - 12,528,598
singlet/doubletsinglet
Overlap genenone
Upstream gene4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
Downstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374M10.T7 (MSMg01no374_m10.b1)MSMg01-374M10.TJ (MSMg01no374_m10.g1)
ACCAG480489AG480490
length793774
length of high quality
(start - end)
249 (72 - 320)435 (58 - 492)
definitionCHROMAT_FILE: MSMg01no374_m10.b1 PHD_FILE: MSMg01no374_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:07 2005CHROMAT_FILE: MSMg01no374_m10.g1 PHD_FILE: MSMg01no374_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAGACAATCCGCGGAAT
TCTTTGTTCTTTCTAGAACCCCATTTTTAAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTT
GTCTTATTGACGGTGTCTTTTGCCTTAGAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTTCCCCTGTGCCTANATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATTTGAAGTTCTTTGATCC
ATTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTTTGGGTCTTCAATTCTATTCCATTTGGCC
ACTTGTCTGTCTCTATTCCACGGTCCTTGCTGGTTTTACCACAATTGCTC
TGGTATAAATGCTTTTTTCTTTTTTTGTTGATTCCCCCGAAGTCTCTTTT
TCCCTGAGTAACATTTTTGTTCTCCTTACGTTTTTCTTTATCTCTATAAA
TTCTCTTTTTTTATTTTCCTTTTTTTCTATAATATCATTTTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATCTGTCTGTCTAGTTGTCTGCTTGTCCATCTGCCTGCACTCC
ACAAGCACATCACACACCATCCTTCTTCTTGAACTTGAGAGCAGCCTAAG
CATGAGACCCATGAGCAGCTGAGCTTTGAATGTGACGCAATGGTTATCCT
GTAAGAGTGAAAGGAGGCAGAGAACAGAAAGGAAGAGAGAGGAGGAGGGA
AGAGGGGCTCCTGTTGTTACGGGCAGCTGTCATCTTGTACACTGAACTCC
CTACTCTGTTTTGCTGACACTGATATCCTGTGATTATCTGAGAACTGACC
AGCATAAACTCACGTGGAGCCAGCTTCACTGTCTCCCCGGAGAGACAGCT
GTGTTAAGTCAGGCTGGCCAATTATCGAGTTCTTTCTTTTGATGATAATA
ATGACTGTGAAACTAAGTCAGACTGGCTGAATGCAGTGTGAGGAAGTTAT
TATAACCCATTTCCTAGCCATGGTCGAAATGGTTAGGTCACTAAAGCTCC
TCCCGGTGTCCATTGCTAGGTTTCTCCCTTTCACTTGAACTCTATATTAA
TCCTGGCCTATGAAATGTTTCTCGTTCAATTCTTATAACTTTCCATCTGT
TTGCCCTCCCTTTTTATTCTTTTACCCCCTCCTAACCCACCATTATCGTC
TCCTTTCTCTTCCCTTATTCCTTCTCATTTCTTTTATATTCCTTCTCCCT
ATATTAATTCCCCCTTATCAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_m10.g1 MSMg01no374_m10.g1 CHROMAT_FILE:
MSMg01no374_m10.g1 PHD_FILE: MSMg01no374_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:07 2005
         (435 letters)



>mm_chr16_12527964_12528798
          Length = 835

 Score =  797 bits (412), Expect = 0.0
 Identities = 430/436 (98%), Gaps = 2/436 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgtctgtctagttgtctgcttgtccatctgcctgcactccacaagcacatcacacac 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atctgtctgtctagttgtctgtttgtccatctgcctgcactccacaagcacatcacacac 576

                                                                       
Query: 61  catccttcttcttgaacttgagagcagcctaagcatgagacccatgagcagctgagcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 catccttcttcttgaacttgagagcagcctaagcatgagacccatgagcagctgagcttt 516

                                                                       
Query: 121 gaatgtgacgcaatggttatcctgtaagagtgaaaggaggcagagaacagaaaggaagag 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaatgtgacacaatggttatcctgtaagagtgaaaggaggcagagaacagaaaggaagag 456

                                                                       
Query: 181 agaggaggagggaagaggggctcctgttgttacgggcagctgtcatcttgtacactgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agaggaggagggaagaggggctcctgttgttacgggcagctgtcatcttgtacactgaac 396

                                                                       
Query: 241 tccctactctgttttgctgacactgatatcctgtgattatctgagaactgaccagcataa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tccctactccgttttgctgacactgatatcctgtgattatctgagaactgaccagcataa 336

                                                                       
Query: 301 actcacgtggagccagcttcactgtctccccggagagacagctgtgttaagtcaggctgg 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 335 actcacgtggagccagcttcactgtctccccggagagacagttgtgttaagtcaggctgg 276

                                                                       
Query: 361 ccaattatcga-gttctttcttttgatgataataatgactgtgaaactaagtcagactgg 419
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccaattatc-acgttctttcttttgatgataataatgactgtgaaactaagtcagactgg 217

                           
Query: 420 ctgaatgcagtgtgag 435
           ||||||||||||||||
Sbjct: 216 ctgaatgcagtgtgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)