Query= MSMg01no374_n01.b1 MSMg01no374_n01.b1 CHROMAT_FILE:
MSMg01no374_n01.b1 PHD_FILE: MSMg01no374_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:10 2005
(590 letters)
>mm_chr16_8023421_8024410
Length = 990
Score = 1000 bits (517), Expect = 0.0
Identities = 566/587 (96%), Gaps = 10/587 (1%)
Strand = Plus / Minus
Query: 5 gaattcattggttgatcc-attcctttccagataggcagaaagaggtagaatttcatctc 63
||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 607 gaattcattagttga-cctattcctttccaaataggcagaaagaggtagaatttcatctc 549
Query: 64 ttatagagaactactactttacacaggttcaagtaatttaatttgggcttgacctccaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttatagagaactactactttacacaggttcaagtaatttaatttgggcttgacctccaaa 489
Query: 124 acctttgtgctgaaagacatacaaaggactatttctctctgcattcaaatggggcaccat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acctttgtgctgaaagacatacaaaggactatttctctctgcattcaaatggggcaccat 429
Query: 184 ggaggaacagcaaccaatgcctaataccctgcagtgtggatactggttttcatcatgtaa 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 428 ggaggaacagcaaccaatgcctaataccctgcagtgtggatactggttctcatcatgtaa 369
Query: 244 cacagacaccaggcaggataaaggaggttgatccttagaagagattcctgggaacatatg 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cacagacgccaggcaggataaaggaggttgatccttagaagagattcctgggaacatatg 309
Query: 304 cttagagtatataagaactgaaggaaaaaatctagcctccttccctgtgtgtgtgtggac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 308 cttagagtatataagaactgaaggaaaaaatctagcctccttccctgtgtgtgtgtgcac 249
Query: 364 acgcatgtgtgtgcgggtacacacacatgcattggtgtctaagctaatgtgtgcctgtgc 423
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 248 acgcatgtgtgtgcgggtacacacacatgcattggtgtctaagcaaatgtgtgcctatgc 189
Query: 424 atgtatgtggaagtcagaggaaagataaccttggatgttcctctgaggaactattcacca 483
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 188 atgtctgtggaagtcagaggaaagataaccttggatgttcctctgaagaactattcacca 129
Query: 484 cctttttatgtgtcagctctctcactggtctggatcttgcttgctaggttgcatggccag 543
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 128 cctttttatgtgtcagctctctcattggcctggatcttgcttgctaggttgcatggccag 69
Query: 544 caacgcccatgatcctcctgtcctcctgtctctgcctccccagtgct 590
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 68 caacgcccatga--------tcctcctgtctctgcctccccagtgct 30
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_n01.g1 MSMg01no374_n01.g1 CHROMAT_FILE:
MSMg01no374_n01.g1 PHD_FILE: MSMg01no374_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:10 2005
(503 letters)
>mm_chr16_7933384_7934286
Length = 903
Score = 973 bits (503), Expect = 0.0
Identities = 503/503 (100%)
Strand = Plus / Plus
Query: 1 ctcacaaaacttcccaccatagagactatctcctttgcaagtaacccagccattgctgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcacaaaacttcccaccatagagactatctcctttgcaagtaacccagccattgctgta 260
Query: 61 ccagcctggagagcctgttctaccacatctggtttatgaagtccctgagaatgaactctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagcctggagagcctgttctaccacatctggtttatgaagtccctgagaatgaactctg 320
Query: 121 ggcttcatgcatgtccagtaatacactacaaaccaaactacaccctggccataccaagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttcatgcatgtccagtaatacactacaaaccaaactacaccctggccataccaagta 380
Query: 181 tctttttgtatattctttttcttcctttagaggaagaaacctaattctgtcttcagcggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttttgtatattctttttcttcctttagaggaagaaacctaattctgtcttcagcggc 440
Query: 241 cactgttctgcttctgaacacctccgacgtcacccacttctcattcccatcaagctttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgttctgcttctgaacacctccgacgtcacccacttctcattcccatcaagctttta 500
Query: 301 gacctgggaaggcaaattgcttaacaattaagtttgacttctgctcttctgatctcgcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctgggaaggcaaattgcttaacaattaagtttgacttctgctcttctgatctcgcat 560
Query: 361 gtttggggctgtgcaatagtccacttagagtagatttcaggaatactacagcaagagata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttggggctgtgcaatagtccacttagagtagatttcaggaatactacagcaagagata 620
Query: 421 attatggaaatttccacaccattgatttgctcatcaacgatctaagttttaatttatttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attatggaaatttccacaccattgatttgctcatcaacgatctaagttttaatttatttg 680
Query: 481 gaagaagagagaaaaagctggta 503
|||||||||||||||||||||||
Sbjct: 681 gaagaagagagaaaaagctggta 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
