BAC Information

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BAC

Clone NameMSMg01-374N14
Chromosome16 (Build37)
Map Location 18,310,132 - 18,310,262
singlet/doubletsinglet
Overlap geneD16H22S680E
Upstream genePik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8
Downstream geneLOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374N14.T7 (MSMg01no374_n14.b1)MSMg01-374N14.TJ (MSMg01no374_n14.g1)
ACCAG480544AG480545
length751802
length of high quality
(start - end)
136 (45 - 180)73 (75 - 147)
definitionCHROMAT_FILE: MSMg01no374_n14.b1 PHD_FILE: MSMg01no374_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:13 2005CHROMAT_FILE: MSMg01no374_n14.g1 PHD_FILE: MSMg01no374_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTCAAAAATTTNNNCCGCTATACNANTCACTATTCAAAGAGGATCCGCG
GAATTCCTGTGTTCCCGTAACCCTCAGATTTCTTGGGGCTGGATCAAACA
TACATGAAACTACTATGAAAAATGCATACATAGCTCCATGTTTANAGAGG
AGGGCAAGCATAGGTTTATGGCCTCTAGGAACCCCCAGTGTGAAANCGAG
GGAGGACTGCTCATCATCGCTTCGACGNNNNNNNTTCTCCCNGNNNNNNN
NNNNNTGCCCCTCCATCANCTTCGANNNNCTTTATTGNNNTNNTCNNNNN
GTGGAGGGGGGGGGGGGGGAGGGGGTGGGGGGGGGGGTGGAGGGGCGGGG
GGGGCGGAGGAAAGAGGGTGCTACGCCCTCGGAATATTTTTGAAGNAGAA
AAAATCCCGGGGGTTTCTTTTTTCTTTTGATGNGGGGGGGGGGGGGGTGG
GAGTTAAGCGCCTCGGTTTTCCGGNNNNGAGAGAAANNCCCCTTCNNNCC
NTCNCNNCNNCNNNNNANNNCCACATTTAGCTATGTTAGTTGGNNAAAAN
NNNNNCCNCANAAAAAAAGAGGGGGGGGGAGGGNNNNNNNNNNNNNNNNN
NNNNNCCNNNNNNNNNNNNNCTCCCNNTTTCCCCCCNNCCCCCCCNCNNC
CCCCCTCCTCTTCTTCTTTCCTCCCCTTTTTNNTCTTCTTTTTCTCTCCC
CTCTCTCCTTTCTTTTTCTCTCTCCTTTTCTTTCCCTTTGTTTTGTGTTT
G
AATACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCGCTTCTCTCCGCCTTCCCTGCC
TGGCACTAGGTAATTTCGTTCCTTTTCCCGGGCTGACAACAATCTAAAAA
ACGCAGGGCCCGCNNGAGNNGACCNCTTTCTCCATCTTCACATNNNNNNN
NNNCAGAGAACTCGGGTAAAGAATTGCCTGAGGGTCGGGTGTGTGGAGGG
GAGGGGGGGCGCGGCGTCCCNAAAAAAACCNCCTGGAAAAAATTCACTTC
TTAACTTCCTTTTAATTAAATCCCCCTACCAAAAAATTGCCCAAAAAAGG
CCCCCCAAAATAAAAATTCCCTTGAAAAAACCCCAAAAAAAGTTTTTTTT
CCAAGGGAAAACCCCCCCCCCCCCTTTCAAAGGAAAAAAAAAAAAATTTG
TTATAGGGGAGAGGTATTTTTTTAAAAAAGGCCCCCTAAACCGGGTCTCC
CCCTCCTCTCCCCTCCAAAAAAACCCCCCCCGAAAAAATATTTTTCTTAA
TCCACAACACAAAAAAAATTTTTTTTCACCATTTTTCTTTACCCCCCCCC
CTTTTTGGGTCTCCTCCCCCCCTAACAAAANTTTTTTTTCCTTCTTTCCA
CCCCTTATTTTCTTCTTCCCTTTCCTCTTCTTCTTTTTTCTCTCCCCCAC
CTCTCCCTTCCTCTAAATCTTTCTTTCTTCCTNCCTTCACCCCCCCCCCC
CTTTCTTCCCCTTCCTTCCCTCTCCCTTTCCTTTTCTTATATTATGTAGT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_n14.b1 MSMg01no374_n14.b1 CHROMAT_FILE:
MSMg01no374_n14.b1 PHD_FILE: MSMg01no374_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:13 2005
         (136 letters)



>mm_chr16_18309926_18310462
          Length = 537

 Score =  201 bits (104), Expect = 1e-56
 Identities = 124/133 (93%), Gaps = 5/133 (3%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcctgtgt---tcccgtaaccctcagatttcttggggctggatcaaacatacatga 63
           ||||||||||||   |  |||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 207 gaattcctgtgtacat--cgtaacccccagatttcttggggctggatcaaacatacatgg 264

                                                                       
Query: 64  aactactatgaaaaatgcatacatagctccatgtttanagaggagggcaagcataggttt 123
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 265 aactactatgaaaaatgcatacgtagctccatgtttagagaggagggcaagcataggttt 324

                        
Query: 124 atggcctctagga 136
           |||||||||||||
Sbjct: 325 atggcctctagga 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 537
Length adjustment: 8
Effective length of query: 128
Effective length of database: 529
Effective search space:    67712
Effective search space used:    67712
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)