BAC Information

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BAC

Clone NameMSMg01-375C24
Chromosome16 (Build37)
Map Location 85,728,060 - 85,728,448
singlet/doubletsinglet
Overlap genenone
Upstream geneMrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000
Downstream geneAdamts1, Adamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375C24.T7 (MSMg01no375_c24.b1)MSMg01-375C24.TJ (MSMg01no375_c24.g1)
ACCAG480803AG480804
length785792
length of high quality
(start - end)		473 (50 - 522)389 (78 - 466)
definitionCHROMAT_FILE: MSMg01no375_c24.b1 PHD_FILE: MSMg01no375_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:42 2005CHROMAT_FILE: MSMg01no375_c24.g1 PHD_FILE: MSMg01no375_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTATTTTTAATAGCTGACTTGTATTCCATTGTATAAAGGT
ACCACATTTTCTGCTTCCATTCCTCTGTTGAGGGACATTGGGGTTCTTTC
CAGTTTCTGGCTATTATAAATAAGGCTGCCATGAACATAGTGGAGCATGT
GTCCTTATTACATGTTGGAGCATCTTCTGGGTATATGCCCAGGAGTGGTA
TAGCTGGGTCCTCCAGTAGTACTATGTTCAGTATCATTTAGTAGCTTCTC
TTTCCTGTCTTTTTCTCAGGTCAGTTGAGTGTATCCTATCTCAGACTCCT
TCTGTCACATCTTTCTTTGATTCCTCACTTTGTCTGCCCCTCAATTGGAT
GCCACTTTCAAACATGGGTGCTTTCTTCTACATTTTATCCTTCATTGTTA
AAGATAAAAAGATGTGCTAAGGGTGACTGTATTTCATCCAGATCATACTG
TAATCTAGGGCATGGCTACATTCTGGCATGGTTGTATCTTTGGATGTGAT
CCCTTGCCAGAGAAGCTATGTTACTGGATTAAAATCCTCTACAGTGTACA
ATCTCCCCCCCGCAAGTTTTGTCCCCCACAATAAGAAGATTTAAAGCGGT
TGAAAAATAAAAAAGCTCATGTGGGTCTCCCCCCCCCCCAAAAAAAGGTT
TTTTTTAACAAAAAGGGTGTCTTGGTTTTAAAAAAAAAATGTTAAGATTG
GTTGAAGGGAATTTGTCTCTACAAAAAAAACCTCC

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAACACTTCTGGTCAACAGA
CAATTGTTCTTCCTCAAAGGCATACAAGCACGTATCTTCTGAGAAACTCT
AGTCCCTCCACTTCCTGAGCATTTAAGGTCGCTCATCCACTATGGGAATA
GTTTTCTGTTCTCCACCTGGTTCACTGTGGATTCTATGTGTAGGGATCTA
GGGAGCCTTTATCTGAAGAGTCTACTACGTATCTTTTTGATAATTCCTCC
TTTGACACAAAGAGGTGGTCTATAGTTTTTAATCATATAGGACAATTTTT
AATGTTTTCTTAGTAGTATCTATAAATTCAACAGCAAATACATTCTAAGG
ATTTACTCTTAGAAAATTGTATACACCCTCCAACTGTGTTTTGATAAATC
CAACTCCCTCTTTTCCAATGTCTTTTATAAGTCCCCATAAACAATGGTGG
CTCCCAACTTCATTAATCTTTAAAAAAAGAAGTCCCCTCACTTCTATAAA
ATGGGGGATGGGGGGGGGGGGACCTTTTTAAAAATGCCAAAATTTTATTC
CGCCTTTCTTAAAAAGAAATTCCCGTCCAAGAGTCCCGAGATATTTTTTT
TAATACTCATGGAGTAACAAGGTGGTCCCTTTTATTAAAAACCTCCTTTT
TTGGGGGTGAGACCAACTTTCTTTTTAATAAATTGCCCGTGGCCATTCGC
GCTTTCTCCAATATCTCAAGGTATAGGGGAGTGTCTTTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_c24.g1 MSMg01no375_c24.g1 CHROMAT_FILE:
MSMg01no375_c24.g1 PHD_FILE: MSMg01no375_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:42 2005
         (389 letters)



>mm_chr16_85727860_85728648
          Length = 789

 Score =  745 bits (385), Expect = 0.0
 Identities = 388/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggaacacttctggtcaacagacaattgttcttcctcaaaggcatacaagcacgtatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctggaacacttctggtcaacagacaattgttcttcctcaaaggcatacaagcacgtatct 530

                                                                       
Query: 61  tctgagaaactctagtccctccacttcctgagcatttaaggtcgctcatccactatggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tctgagaaactctagtccctccacttcctgagcatttaaggtcgctcatccactatggga 470

                                                                       
Query: 121 atagttttctgttctccacctggttcactgtggattctatgtgtagggatctagggagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atagttttctgttctccacctggttcactgtggattctatgtgtagggatctagggagcc 410

                                                                       
Query: 181 tttatctgaagagtctactacgtatctttttgataattcctcctttgacacaaagaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttatctgaagagtctactacgtatctttttgataattcctcctttgacacaaagaggtg 350

                                                                       
Query: 241 gtctatagtttttaatcatataggacaatttttaatgttttcttagtagtatctataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtctatagtttttaatcatataggacaatttttaatgttttcttagtagtatctataaat 290

                                                                       
Query: 301 tcaacagcaaatacattctaaggatttactcttagaaaattgtatacaccctccaactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tcaacagcaaatacattctaaggatttactcttagaaaattgtatacaccctccaactgt 230

                                        
Query: 361 gttttgataaatccaactccctcttttcc 389
           ||||||||||||||| |||||||||||||
Sbjct: 229 gttttgataaatccacctccctcttttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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