BAC Information

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BAC

Clone NameMSMg01-375F08
Chromosome16 (Build37)
Map Location 17,618,431 - 17,618,757
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4
Downstream geneSmpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375F08.T7 (MSMg01no375_f08.b1)MSMg01-375F08.TJ (MSMg01no375_f08.g1)
ACCAG480914AG480915
length767773
length of high quality
(start - end)		465 (55 - 519)327 (86 - 412)
definitionCHROMAT_FILE: MSMg01no375_f08.b1 PHD_FILE: MSMg01no375_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:53 2005CHROMAT_FILE: MSMg01no375_f08.g1 PHD_FILE: MSMg01no375_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAACCACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTCATCTGCTTCAGAACTACTAAGAGCTGGCTTCCT
GAGCTCATCTAGTGACGAGTATCTCCTAGAGACCTCCGCTAATCGATCTT
TTTTCTTTTCTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTATTC
TTACCTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGT
ATACTTATTTTGTGTACCATATTTTCTCTTTGCTCCTACTCTCTCTCCCC
GCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCT
ATCTTAATCACCTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACAC
TAGAAAAAATTCAAGGCCAAACATTTTCCACTTTACTTCTGATAGACTGT
CTTGAATTTCCTTAGAAAGTTCAAGACCAGACTTACCTCGCAAAGCTGTA
CTCACTGGTACTCTCGTTCCCCAGCTGACAAGTTCTGAAATCATGCAGTT
GAATCCTTCTTAACAGTCTGCTTTACGGGAACCCTTATTATCCGCGACCC
GCAATTCTTGTTTCTGGAATGAGGGAATTTCCCCGTGGGCGGTCCCGAGG
TTTTTTTGTGTTTTTTTTTCCTCGTGGCTCCGCTTTCCCTTTTTTTTATC
GCTTCCTGCGCCCCCCCTTAGCTATACTTTCCCCCTCCCCATACCTTTCT
TGGCGGAATTATTTATT

NNNNNAAATCTATGAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAGTCTAGCAGG
TGAGGAGCCTCCACAGCGCCAGCTACTGGCCACCTCTTTCCTTGCCAGGC
CCTGCAGCTCCCAGTCTGTAGCGGCTCCAACAACCCAGGGCAAGCATCCC
GAGAGGTTTTTACATACTTGCTTGACTTGTTCTGAGTGCTTAATGTGAAT
AGGGCAGTATGTTAGCCATGGGAATGGTGTGGTGGAAAGCTGTCCGCTGC
CTGACGATCAGATCCCTGATAGACGGATTTAGGTAGCAGCACCCAGAACC
GTGCCTGGCATATGCTGGGTACTTGGTAAATCCTGTTGGATGATGGGTAT
TTAGGATTGCATGTACTTATCTATTCTGTGCAGGTTTCTTCCTTGAAGCC
CTCTTTAAGGGCTCTAAAAATACACTTCTCAAATTTTTATTAAATCAGCA
AACATCACCGATTTTTGTTTGTTTTTCAAGAAAGGCCCATCGAATCCCTG
ATATCATCTAAATCTTCTCTCTGCAATTAACTTTGCCTTTCCATTTAATC
AACTATCTTTCTTATCCTCAATCCCATCCCCCGATTTTTGTCTTTTCTGC
CCCTGCTTCGCACCACTCCCTTTGTTCCTGTCCTTCTCCCTCCTCTTTTG
CTCCCTACTTGCCTCTAAGTTTTACCTTTTTTATTCTTTCCCTTCTCTAT
TTCTTTTCTTTCCTTTTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_f08.g1 MSMg01no375_f08.g1 CHROMAT_FILE:
MSMg01no375_f08.g1 PHD_FILE: MSMg01no375_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:54 2005
         (327 letters)



>mm_chr16_17618231_17618957
          Length = 727

 Score =  632 bits (327), Expect = 0.0
 Identities = 327/327 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcagtctagcaggtgaggagcctccacagcgccagctactggccacctctttccttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcagtctagcaggtgaggagcctccacagcgccagctactggccacctctttccttgc 260

                                                                       
Query: 61  caggccctgcagctcccagtctgtagcggctccaacaacccagggcaagcatcccgagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggccctgcagctcccagtctgtagcggctccaacaacccagggcaagcatcccgagag 320

                                                                       
Query: 121 gtttttacatacttgcttgacttgttctgagtgcttaatgtgaatagggcagtatgttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttttacatacttgcttgacttgttctgagtgcttaatgtgaatagggcagtatgttag 380

                                                                       
Query: 181 ccatgggaatggtgtggtggaaagctgtccgctgcctgacgatcagatccctgatagacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatgggaatggtgtggtggaaagctgtccgctgcctgacgatcagatccctgatagacg 440

                                                                       
Query: 241 gatttaggtagcagcacccagaaccgtgcctggcatatgctgggtacttggtaaatcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttaggtagcagcacccagaaccgtgcctggcatatgctgggtacttggtaaatcctg 500

                                      
Query: 301 ttggatgatgggtatttaggattgcat 327
           |||||||||||||||||||||||||||
Sbjct: 501 ttggatgatgggtatttaggattgcat 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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