BAC Information

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BAC

Clone NameMSMg01-375I06
Chromosome16 (Build37)
Map Location 39,126,203 - 39,126,722
singlet/doubletsinglet
Overlap genenone
Upstream geneGsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375I06.T7 (MSMg01no375_i06.b1)MSMg01-375I06.TJ (MSMg01no375_i06.g1)
ACCAG481050AG481051
length753749
length of high quality
(start - end)
496 (51 - 546)520 (82 - 601)
definitionCHROMAT_FILE: MSMg01no375_i06.b1 PHD_FILE: MSMg01no375_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:08 2005CHROMAT_FILE: MSMg01no375_i06.g1 PHD_FILE: MSMg01no375_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTAAAGTCTCCTGACGCAACTGGAGTTGGGAACCATCAAG
GAGTCTGAAGTGAATTTAAATATATATAGTTTTTTCCTCAGTCAGCCCAA
AGCATTTGGCAGGAAACTCAGATGAGTGCTTGGCCCTGCGATATTTCAAC
GATGAAACATCAATTAAAATATGCATCGTTTGTCTTCACTGGCACTCATT
CCTGCTGATGAAGTTCCAGGAGCTTTTCAGGAATGAAAGCCTCGTTTGCC
TGAAGAAGCCAGTGAAGTGACGGACTGAGCGGAAACAGTTCTGGGCACGG
TAGGGTAGGAAGGCAGTTTCGCTGAGGCTCCGCCCTTTGAGCATCCGCCT
CAGTGCTACCCATCAGCAGCCAGCATGTGAACACGTCCGGTCTGAGTTTC
TGTCTGCCCTCTAGATGCAGTGTGGCGTGGGAGATCAGAAAACAGGGTAT
GCTTACACGGGAATATAAAAGCCATAGGACATTTTCAAAAGGAGGACCTA
AAAAAAGCACGCAAACCTGTTCCCAACAAGCCGTCAATACTAGGAGAACA
AGGCAGGGCTTCCAAATGTCCTCAAAAATCCCAGAAGTCAGCCAGTTTTT
CCCCGGGTTACCTCTGTATCATCCAAAAACCTGGGGCTTGATTACACTTT
TGTCAAGGGTCAAGGTTTTGTTTGGTTGGCTGGTTCCTNAACCCTCTCGT
TTN
NTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGTGGACAGACAGACC
AGAGCGGAGCAGAGATGTATAGACTTGGCCACGTGGCGGGACGTTAGGTG
AGGATTAGCCAGGATAGAATAATCAGAAGCGTACCCAACTAAAGCCTAAG
CGTTAAAATATTAATAAGACTCTGTGTCATTTTTTATATCATTGGTGGGT
CCAAAAAAGTCCTGCTATACTGTATACAGCAGGAAAGGAGTGGGGGATGG
GAGGCTCTGAGTAGTGAACTTCTTAATTTAAAATATCATCACTGTAATGA
CTTACTGAGGTGACATCTGAGTGTGGATATGAGAAAAGAAAAAAAAAAAA
ACTGCCCATGCACGTGCCTAAAGAGAGCTCCATGCAGAAAGCAGCCATGA
GCAAATCTCTGAACCAAAAAATATGTCTGGAATCCTGGAAGCTAATGTGA
GCCAGAAAGGAGGCTATTAGGATATTAGCTCAGAAACCCTTGTGAAGAGC
TTTATAGAACTTGGTAAGGATTCACGCTGTGACTCTGAGTGATATATGGA
TCCATTTAAGGTTTTGAGCAGAAGAGTCCCACAGCTTGACTTTGGTTTTG
AAAAGCTATACAGCCTGGCTGCCATTGGAAGTGACCTTGTTTGCTCCCGG
ACCCATCCAGGTGTCCTGTAAAGGCATTTGCTGTGGAGTTGTAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_i06.g1 MSMg01no375_i06.g1 CHROMAT_FILE:
MSMg01no375_i06.g1 PHD_FILE: MSMg01no375_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:08 2005
         (520 letters)



>mm_chr16_39126003_39126922
          Length = 920

 Score = 1006 bits (520), Expect = 0.0
 Identities = 520/520 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggtggacagacagaccagagcggagcagagatgtatagacttggccacgtggcggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 agaggtggacagacagaccagagcggagcagagatgtatagacttggccacgtggcggga 661

                                                                       
Query: 61  cgttaggtgaggattagccaggatagaataatcagaagcgtacccaactaaagcctaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cgttaggtgaggattagccaggatagaataatcagaagcgtacccaactaaagcctaagc 601

                                                                       
Query: 121 gttaaaatattaataagactctgtgtcattttttatatcattggtgggtccaaaaaagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gttaaaatattaataagactctgtgtcattttttatatcattggtgggtccaaaaaagtc 541

                                                                       
Query: 181 ctgctatactgtatacagcaggaaaggagtgggggatgggaggctctgagtagtgaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctgctatactgtatacagcaggaaaggagtgggggatgggaggctctgagtagtgaactt 481

                                                                       
Query: 241 cttaatttaaaatatcatcactgtaatgacttactgaggtgacatctgagtgtggatatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cttaatttaaaatatcatcactgtaatgacttactgaggtgacatctgagtgtggatatg 421

                                                                       
Query: 301 agaaaagaaaaaaaaaaaaactgcccatgcacgtgcctaaagagagctccatgcagaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agaaaagaaaaaaaaaaaaactgcccatgcacgtgcctaaagagagctccatgcagaaag 361

                                                                       
Query: 361 cagccatgagcaaatctctgaaccaaaaaatatgtctggaatcctggaagctaatgtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cagccatgagcaaatctctgaaccaaaaaatatgtctggaatcctggaagctaatgtgag 301

                                                                       
Query: 421 ccagaaaggaggctattaggatattagctcagaaacccttgtgaagagctttatagaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccagaaaggaggctattaggatattagctcagaaacccttgtgaagagctttatagaact 241

                                                   
Query: 481 tggtaaggattcacgctgtgactctgagtgatatatggat 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tggtaaggattcacgctgtgactctgagtgatatatggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)