BAC Information

Click to search

BAC

Clone NameMSMg01-376A13
Chromosome16 (Build37)
Map Location 25,344,738 - 25,532,805
singlet/doubletdoublet
Overlap gene5430420C16Rik
Upstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376A13.T7 (MSMg01no376_a13.b1)MSMg01-376A13.TJ (MSMg01no376_a13.g1)
ACCAG481447AG481448
length747751
length of high quality
(start - end)		546 (46 - 591)525 (76 - 600)
definitionCHROMAT_FILE: MSMg01no376_a13.b1 PHD_FILE: MSMg01no376_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:49 2005CHROMAT_FILE: MSMg01no376_a13.g1 PHD_FILE: MSMg01no376_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,532,264 - 25,532,805)(25,344,738 - 25,345,262)
sequence
NCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCCTTGATGCTGTCCTGTAAGCTCACGCCCATTTCCAAAGTGGC
TGCCAAGTTTTCCAAAGGGTCTTTAAACCTGGATTTAAAACTGAAAGGAA
AGAAATAGGACCTTCCTCTACCAGATAGTATATCATTTTTGAGGTTGTTT
AAAATATGAAACGTAAGGAAGTAATTAATTTGGATGGTACAAAGGAACAA
AGGCTTAATAGGAAGTCAGAGGTTTGACCTAGACACTGTGTCTGTAACCT
CTAAAAGCTTCGTTTGGCTCCTTCTGAGAACGGTTCTTCTTTTTAAGGGA
CCTGTTCCCTTATATACACTTATTCTTTGCACTCTCTATAATAAGGGCAA
TAATGATCTATGGGTTTATAGTTCATAAAGGATTGATTATATACAACACA
AAGATAAGCCCACCCTTTCAATGTAACAGTGCCATGACCAAGACCTATTT
AAACAGAAGGTAAACTGAAGCCGAGGAGTGCTCCACTCCAGACTTGCTTT
AAGGCAGGACTGACCTCTATGGCTGACTATCCTATGAGTCAGATGCCTGT
GGTGTAACTGAGACGCAAAAGAAGCGCTGTGGCTTTGGAATGGGCAGCTC
TCTGATCTGAAGAGATCCCAGAAAGGCACAAGTTGGGCTTCTGCTCAAGG
TTTCAGTGCAGCAGAGTTCAAGGAAACTTCTTGCCTCTTTGCCCTTC

GAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTAAAGAGAATTTAGGGGAGGAGA
GGATGCTCCGGGGGTTGGACCTCTCATGAGCTCCTGGTGTGCAGTAGATG
GCTTGAGTGATTTAACATCTATTCATTAATTTTGTGGGGGAAAGTAAAGA
GTAGGGTGTTTCCTGATCCCTTTCTTTTGTGTAGCTATTAAAGTGCTGTC
TTCTTGGTGGTAGCATTTTGGGGAGAGAAAAATTGTTGCACAGTGTAGGA
AACATAAAAGGAAAAATAACTCTTTGGCCTATACACTGACTGGTATATCG
GAACTAATGAACATGCTGTTGCCTTGGTCATTTCTTGATCGGTCCCTGTC
ACATTATTGTGGCATGGCTCCTGCATCTGTAAAGTACAATATTATAGGCA
TGTAATGTGAAAAGCAGTAAGTTTCAAGAAAATTGTGGTCACTTCTGTAT
GATCTGGTCCATGCTTAAATTCCCTCCCTGTTTCTTTGTGTCCTATATGG
CTCTTTCTGAAATACATCTCAAGGACTTTGCAGACACTCTCTATTGAATG
CCATCCCCACAGATATTCTCCCGATGCTCCTTTAAAATTTATTTTTATTT
TATGCATATGAATGTTCTTGGCCTCCGTGCTGAAAATGGACTGAATGTGT
TCCTGGGGCCCATGGAAACCATTTTTTTTGGGCCCCGGGAACTTAATTTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_a13.b1 MSMg01no376_a13.b1 CHROMAT_FILE:
MSMg01no376_a13.b1 PHD_FILE: MSMg01no376_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:49 2005
         (546 letters)



>mm_chr16_25532060_25533005
          Length = 946

 Score =  978 bits (506), Expect = 0.0
 Identities = 533/542 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagccttgatgctgtcctgtaagctcacgcccatttccaaagtggctgccaagtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaattcagccttgatgctgtcctgtaagctcacgcccatttccaaagtggctgccaagtt 687

                                                                       
Query: 65  ttccaaagggtctttaaacctggatttaaaactgaaaggaaagaaataggaccttcctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttccaaagggtctttaaacctggatttaaaactgaaaggaaagaaataggaccttcctct 627

                                                                       
Query: 125 accagatagtatatcatttttgaggttgtttaaaatatgaaacgtaaggaagtaattaat 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 626 accagatagtatatcatttttgaggttgtttaaaatatgaagcgtaaggaagtaattaat 567

                                                                       
Query: 185 ttggatggtacaaaggaacaaaggcttaataggaagtcagaggtttgacctagacactgt 244
           |||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 566 ttggatggtaaaaaggaataaaggcttaataggaagtcggaggtttgacctggacactgt 507

                                                                       
Query: 245 gtctgtaacctctaaaagcttcgtttggctccttctgagaacggttcttctttttaaggg 304
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 506 gtctgtaacctctaaaagcttcgttcggctcgttctgagaacggttcttctttttgaggg 447

                                                                       
Query: 305 acctgttcccttatatacacttattctttgcactctctataataagggcaataatgatct 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 446 acctgttcccttatatacacttattctttgcactctctacaataagggcaataatgatct 387

                                                                       
Query: 365 atgggtttatagttcataaaggattgattatatacaacacaaagataagcccaccctttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgggtttatagttcataaaggattgattatatacaacacaaagataagcccaccctttc 327

                                                                       
Query: 425 aatgtaacagtgccatgaccaagacctatttaaacagaaggtaaactgaagccgaggagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatgtaacagtgccatgaccaagacctatttaaacagaaggtaaactgaagccgaggagt 267

                                                                       
Query: 485 gctccactccagacttgctttaaggcaggactgacctctatggctgactatcctatgagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctccactccagacttgctttaaggcaggactgacctctatggctgactatcctatgagt 207

             
Query: 545 ca 546
           ||
Sbjct: 206 ca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_a13.g1 MSMg01no376_a13.g1 CHROMAT_FILE:
MSMg01no376_a13.g1 PHD_FILE: MSMg01no376_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:50 2005
         (525 letters)



>mm_chr16_25344538_25345462
          Length = 925

 Score =  946 bits (489), Expect = 0.0
 Identities = 516/525 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaaagagaatttaggggaggagaggatgctccgggggttggacctctcatgagctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaaagagaatttaggggaggagaggatgctccgggggttggacctctcatgagctcct 260

                                                                       
Query: 61  ggtgtgcagtagatggcttgagtgatttaacatctattcattaattttgtgggggaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ggtgtgcagtagatggcttgagtgatttaacatctattcattaattttgtgggggaaggt 320

                                                                       
Query: 121 aaagagtagggtgtttcctgatccctttcttttgtgtagctattaaagtgctgtcttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagtagggtgtttcctgatccctttcttttgtgtagctattaaagtgctgtcttctt 380

                                                                       
Query: 181 ggtggtagcattttggggagagaaaaattgttgcacagtgtaggaaacataaaaggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggtagcattttggggagagaaaaattgttgcacagtgtaggaaacataaaaggaaaa 440

                                                                       
Query: 241 ataactctttggcctatacactgactggtatatcggaactaatgaacatgctgttgcctt 300
           ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 441 ataactcgttggcctatacactgactagtatatgggaactaatgaacatgctgttgcctt 500

                                                                       
Query: 301 ggtcatttcttgatcggtccctgtcacattattgtggcatggctcctgcatctgtaaagt 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtcatttcttgatcagtccctgtcacattattgtggcatggctcctgcatctgtaaagt 560

                                                                       
Query: 361 acaatattataggcatgtaatgtgaaaagcagtaagtttcaagaaaattgtggtcacttc 420
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 acaatattataggcttgtaatgtgaaaagcagtaagtttcaaggaaattgtggtcacttc 620

                                                                       
Query: 421 tgtatgatctggtccatgcttaaattccctccctgtttctttgtgtcctatatggctctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtatgatctggtccatgcttaaattccctccctgtttctttgtgtcctatatggctctt 680

                                                        
Query: 481 tctgaaatacatctcaaggactttgcagacactctctattgaatg 525
           |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 681 tctgaaatacatctcaaggacttttcagacactctccattgaatg 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |