BAC Information

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BAC

Clone NameMSMg01-376B01
Chromosome16 (Build37)
Map Location 59,256,555 - 59,257,137
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1
Downstream geneOlfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376B01.T7 (MSMg01no376_b01.b1)MSMg01-376B01.TJ (MSMg01no376_b01.g1)
ACCAG481471AG481472
length744747
length of high quality
(start - end)		633 (44 - 676)583 (75 - 657)
definitionCHROMAT_FILE: MSMg01no376_b01.b1 PHD_FILE: MSMg01no376_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:52 2005CHROMAT_FILE: MSMg01no376_b01.g1 PHD_FILE: MSMg01no376_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACACATGCTCCAGGCACGAGCTCAGGTCATTCACAGATAGGCTGACA
GGTCCAGTTCACGAGGATCAGTCCAGCCTGGCAGGCAGCCCACGCATGCA
GCCTCACTGCGCATGCTCGGGCAAGGCAGTAAACAACTTGGCCCTTGCAG
CCACACCTGCTTCCTGCATCTCCCCTTTTTGTTTTATTAGTAGCTCAGGG
ATCAGTATCTCTCTTAGGTTGCCCCCATCGGTGCCACATCCTCACCTGTT
ATGGGAGTGACGAACTCACTTTCGCCATCCTGTATTAGGTTGGTATGTGC
ACGTGAGGGTCTTACACGTCATTGATTACTAATCCAGCATGTTGAGCAGG
GATTTTCCTGCTTCCAAGGCTGCCATAGCCTGCACTAAGGCTCGTTTATC
AACCCTGTGCCACCTTTGCATACATGCCATCCACCAAAGCATTCCTCCAC
ACACAACAGTCAACAGGAACACGCGAAATGCCATCCCTCCCCAATTTTTT
AAGAATTCCAGAGTTCCCTGGATGATCTTCAGCCATTGCTTTGCAGTTGC
AATCTCCACAAAGGTGTTGTTCACGGCAACAATCGATGCTTGCAATTCCT
TCATCTTTGTGTCGAGATCATGACTCCAATTTCCTAGCAGCATCGCACCA
ATTGCACATGACAGATTTGCAGCTCTGGAAAAATTCTGATACTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAAGAAAATCAAATTAGTTAATTC
AGGACAAAATTCTCATATAATTCTCAAAGTAAAGCATTTAACAAGTAATA
TAAAAAAGAGGCCATGACTTTGAAAAAACAAGTTGGAGTACGTGGGAGGA
TTTAGAGAGTGGAATGGGAAGAAAGAATTACTGTGATTATATTATAATCT
GAAAAATAACAGTTATAATAACATTATAGGTTTGTTCATGTAATGTTTCT
TTCAGTATAATTCATAGTTAAGGATTTTGAAACTCGTTCATTCTTCCTGA
ACTTTCAGGAAAAATAAACTGACGTCTCACAATTGGTTACTTATGGTGAT
TTTTAACTTTCAAAGAGATAGCATCTACTTATATTTAAAAATTGCATAAG
GCCTGTTTTTATATTGTTTTCTCATAGTAAAATATTTTTATATTACTCAA
GCATCAGTAGTATGACTCTATAAATAAGAAAGTTAGCACTTGTAGAAATA
ACATAGCAACGTGTATACATACTTCCAAAAATATTTTTTCCTTTTCAAAA
ATCATAAGCAAAACAGTAGCACACATTTGCAAACCCAGCCCTTAGGTGAC
AGAGGCAGAAGAATCACTGTGTGTTCAAGAATTAATCTACNAAGCAAGTT
TCAAGCCACCAAACACTACAGAGTCAGACCGTATATCAAGAAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_b01.g1 MSMg01no376_b01.g1 CHROMAT_FILE:
MSMg01no376_b01.g1 PHD_FILE: MSMg01no376_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:52 2005
         (583 letters)



>mm_chr16_59256170_59257152
          Length = 983

 Score = 1089 bits (563), Expect = 0.0
 Identities = 578/583 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaagaaaatcaaattagttaattcaggacaaaattctcatataattctcaaagtaaag 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 ataaagaaaatcaaatttgttaattcaggacaaaattctcatataattctcaaagtaaag 909

                                                                       
Query: 61  catttaacaagtaatataaaaaagaggccatgactttgaaaaaacaagttggagtacgtg 120
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 908 catttaacaattaatataaaaaagaggccatgactttgaaaaagcaagttggagtacgtg 849

                                                                       
Query: 121 ggaggatttagagagtggaatgggaagaaagaattactgtgattatattataatctgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ggaggatttagagagtggaatgggaagaaagaattactgtgattatattataatctgaaa 789

                                                                       
Query: 181 aataacagttataataacattataggtttgttcatgtaatgtttctttcagtataattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aataacagttataataacattataggtttgttcatgtaatgtttctttcagtataattca 729

                                                                       
Query: 241 tagttaaggattttgaaactcgttcattcttcctgaactttcaggaaaaataaactgacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tagttaaggattttgaaactcgttcattcttcctgaactttcaggaaaaataaactgacg 669

                                                                       
Query: 301 tctcacaattggttacttatggtgatttttaactttcaaagagatagcatctacttatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tctcacaattggttacttatggtgatttttaactttcaaagagatagcatctacttatat 609

                                                                       
Query: 361 ttaaaaattgcataaggcctgtttttatattgttttctcatagtaaaatatttttatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttaaaaattgcataaggcctgtttttatattgttttctcatagtaaaatatttttatatt 549

                                                                       
Query: 421 actcaagcatcagtagtatgactctataaataagaaagttagcacttgtagaaataacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 actcaagcatcagtagtatgactctataaataagaaagttagcacttgtagaaataacat 489

                                                                       
Query: 481 agcaacgtgtatacatacttccaaaaatattttttccttttcaaaaatcataagcaaaac 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agcaacgtgtatatatacttccaaaaatattttttccttttcaaaaatcataagcaaaac 429

                                                      
Query: 541 agtagcacacatttgcaaacccagcccttaggtgacagaggca 583
           |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 428 agtagcacccatttgcaaacccagcccttaggtgacagaggca 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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