Query= MSMg01no376_f14.b1 MSMg01no376_f14.b1 CHROMAT_FILE:
MSMg01no376_f14.b1 PHD_FILE: MSMg01no376_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:13 2005
(511 letters)
>mm_chr16_35092831_35093741
Length = 911
Score = 826 bits (427), Expect = 0.0
Identities = 480/509 (94%), Gaps = 24/509 (4%)
Strand = Plus / Minus
Query: 24 gttcagagctattacataaagaaaccctgttt--------caaaaaaacaaaaacaaaca 75
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 911 gttcagagctattacataaagaaaccctgtttcaaaaaaacaaaaaaacaaaaacaaaca 852
Query: 76 aaaaaccaaaaaacaacaacaaaagaaccaaacccccc-aaccaaaaaccaaacaaat-- 132
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 851 aaaaaccaaaaaacaacaacaaaaaaaccaaaccccccaaaccaaaaaccaaacaaataa 792
Query: 133 --aaacaaacaaaaacccacca----cccaaaaaaaaaacc----accaaaaaacaaaaa 182
|||||||||||||||||||| ||| |||||||||| ||| |||||| ||||
Sbjct: 791 acaaacaaacaaaaacccaccaccccccc--aaaaaaaaccaaaaacc-aaaaaccaaaa 735
Query: 183 aacaaacggaacagcaaccgaacccaaccccacccaccaaaccccctgcaggctcaatct 242
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aacaaacggaacagcaacccaacccaaccccacccaccaaaccccctgcaggctcaatct 675
Query: 243 agccaatcagccaacctctataataggttcatttaactctcacctttgcccttcctagga 302
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 674 agccaatcagccaacctctataataggttcatttaactctcacttttgcccttcctagga 615
Query: 303 tccttcttaccacacaaatggttatccttctccagcattccttttaaaggctggatttga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tccttcttaccacacaaatggttatccttctccagcattccttttaaaggctggatttga 555
Query: 363 aggacaggagtacagtcaatatgatgtcctgaggtcatttcttcatgcaaacagcacagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aggacaggagtacagtcaatatgatgtcctgaggtcatttcttcatgcaaacagcacagt 495
Query: 423 gcatttgtataaatctaagtgataaattagaataaactagaattgcacatctagagtgtt 482
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 494 gcatttgtataaatctaagtgataaactagaataaactagaattgcacatctagagtgtt 435
Query: 483 taaccgatgtgctgcactttcataaggtg 511
|||||||||||||||||||||||||||||
Sbjct: 434 taaccgatgtgctgcactttcataaggtg 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_f14.g1 MSMg01no376_f14.g1 CHROMAT_FILE:
MSMg01no376_f14.g1 PHD_FILE: MSMg01no376_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:13 2005
(526 letters)
>mm_chr16_34906976_34907903
Length = 928
Score = 924 bits (478), Expect = 0.0
Identities = 515/528 (97%), Gaps = 2/528 (0%)
Strand = Plus / Plus
Query: 1 ctgatcctcctgcctctccctctagactgctgggcttcgtgagcatgcactatgatgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 201 ctgatcctcctgcctctccctctagactgctgggcttcgtgagcatgcactctcatgccc 260
Query: 61 ggctgtatgtggtcctgggtgttgagcttggcttaatttgtgcactctgccaaccaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ggctgtatgtggtcctgggtgttgagcttggcttaatttgtgcactctgccaaccgagct 320
Query: 121 acaaccccagccccacagctgtgttgacatagtttcttagagtcatctaaaagtcctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaccccagccccacagctgtgttgacatagtttcttagagtcatctaaaagtcctgca 380
Query: 181 gtgggatcacagtacacactctactcatctaggttgtgttttattgttggtaataatgaa 240
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgggatcacagtacacgctctactcatctaggttgtgttttattgttggtaataatgaa 440
Query: 241 catacatggtctaccttttgcctgtctggtctctgctctgcttttcttcagctgtcaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catacatggtctaccttttgcctgtctggtctctgctctgcttttcttcagctgtcaaaa 500
Query: 301 ataggctttatgaatgagctgcaatgtgctgtcctctgtggtactgtcacagcccgctgt 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ataggctttatgaatgagctgcaatgtgctgtcctccgtggtactgtcacagcccgctgt 560
Query: 361 ggtcagcactggag--tgctggttccctttggagaggcatctatggtgtaccctgccttg 418
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtcagcactggagagtgctggttccctttggagaggcatctatggtgtaccctgccttg 620
Query: 419 tcctcaggagacctgggcaagtgatccatccaggccatccctctctggctgcgtggccac 478
||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 621 tcctcgggaggcctgggcaagtgatccatcctggccatccttctctggctgcgtggccac 680
Query: 479 cgtaacacatcctgggctcactcagtgggtagtggtttgggactgagg 526
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtaacacatcctgggctcactcagtgggtagtggtttgggactgagg 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 928
Length adjustment: 10
Effective length of query: 516
Effective length of database: 918
Effective search space: 473688
Effective search space used: 473688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
