Query= MSMg01no376_g02.b1 MSMg01no376_g02.b1 CHROMAT_FILE:
MSMg01no376_g02.b1 PHD_FILE: MSMg01no376_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:16 2005
(536 letters)
>mm_chr16_3945057_3945992
Length = 936
Score = 990 bits (512), Expect = 0.0
Identities = 527/532 (99%), Gaps = 1/532 (0%)
Strand = Plus / Plus
Query: 5 gaattcactatgtgtccaaagacaaccttgaagtactgatcctcctgcctccaccaagtg 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattcactatgtgtccaaagacaaccttgaactactgatcctcctgcctccaccaagtg 264
Query: 65 ctgggattacaggctattcttggcttaaatctaatctctttgtcaaggctgcatttgtct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgggattacaggctattcttggcttaaatctaatctctttgtcaaggctgcatttgtct 324
Query: 125 cgttacttgctgtgttgccttttttcctacatatacagcatcacctctcactatcaactg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgttacttgctgtgttgccttttttcctacatatacagcatcacctctcactatcaactg 384
Query: 185 tcaactgccatgataagtcttctgaatactcaagttttaggtttttgttttgaaactcac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaactgccatgataagtcttctgaatactcaagttttaggtttttgttttgaaactcac 444
Query: 245 gttttagttttagctagcctcaaatttatgcttctcctttcttgtcctctcaagcactag 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttttagttttagctagcctcaaatttatgcttctcctttcttgtcctctcaagcactag 504
Query: 305 aattacaagtgtgttccacatgtccagctcctgcatactcattattttttagacttattt 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 aattacaagtgtgttccacatgtccagctcctgcatactcatt-ttttttagacttattt 563
Query: 365 atttatttatttaaagtacactgtagctgtcctcagacactccagaagagggagttagat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 atttatttatttaaagtacactgtagctgtcctcagacactccagaagagggagtcagat 623
Query: 425 ctcgttatggatggttgtgagccaccgtgtggttgctgggatttgaactcctgaccttcg 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 ctcgttatggatggttgtgagccaccatgtggttgctgggatttgaactcctgaccttcg 683
Query: 485 gaagagcagtcgggtgctcttacccactgagccatctcaccagccccctcat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaagagcagtcgggtgctcttacccactgagccatctcaccagccccctcat 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_g02.g1 MSMg01no376_g02.g1 CHROMAT_FILE:
MSMg01no376_g02.g1 PHD_FILE: MSMg01no376_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:16 2005
(504 letters)
>mm_chr16_4128545_4129448
Length = 904
Score = 959 bits (496), Expect = 0.0
Identities = 502/504 (99%)
Strand = Plus / Minus
Query: 1 catgaaagggtttttaaaaagaaaggtctgttgctaatgctgccattacacaattaagtt 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 catgaaagggttttttaaaagaaaggtctgttgctaatgctgccattacacaattaagtt 645
Query: 61 tagagaaatgccattttgtaatttagaggatcacctcatagatctatagattaagaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tagagaaatgccattttgtaatttagaggatcacctcatagatctatagattaagaagtg 585
Query: 121 tccaacaggttcccctttcctatttctctcagtttacagaagtgaatactaaaagctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tccaacaggttcccctttcctatttctctcagtttacagaagtgaatactaaaagctagg 525
Query: 181 tggggcaacagcttgtaggaaggctccttccttcactgtgaggtagttgtcgacccattc 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 524 tggggcaacagcttgtaggaaggctccttccttcactgggaggtagttgtcgacccattc 465
Query: 241 ataattatgtactttgcatacatttgacactccttgtaactgacttcctagttatctcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ataattatgtactttgcatacatttgacactccttgtaactgacttcctagttatctcta 405
Query: 301 gattttaataaatactaatttttactaagtgaactctttttaatttttttatgttttgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gattttaataaatactaatttttactaagtgaactctttttaatttttttatgttttgtt 345
Query: 361 gcttttagacataaagggtggatttgctttagatttttgttccttaactactgctagaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gcttttagacataaagggtggatttgctttagatttttgttccttaactactgctagaca 285
Query: 421 aaatagattctgtgctgcttatttcttgctagatttaatgcttactctttgaaaagctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaatagattctgtgctgcttatttcttgctagatttaatgcttactctttgaaaagctta 225
Query: 481 tttgactcatttatcgtttatttg 504
||||||||||||||||||||||||
Sbjct: 224 tttgactcatttatcgtttatttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
