BAC Information

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BAC

Clone NameMSMg01-376G15
Chromosome16 (Build37)
Map Location 61,515,435 - 61,515,687
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, EG668168, LOC668170, LOC100043524, LOC668183
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376G15.T7 (MSMg01no376_g15.b1)MSMg01-376G15.TJ (MSMg01no376_g15.g1)
ACCAG481736AG481737
length715741
length of high quality
(start - end)		371 (46 - 416)427 (76 - 502)
definitionCHROMAT_FILE: MSMg01no376_g15.b1 PHD_FILE: MSMg01no376_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:18 2005CHROMAT_FILE: MSMg01no376_g15.g1 PHD_FILE: MSMg01no376_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAGTATTACCATTTTATACATCATATCTTTCCAATATATATAAT
TATTGCAAAACAAAAAATTCCAAATATATTACATCATATATTTAAAATGA
TATTGTATAGAGAAGAAAGCAACAAAACCTATACTTTAGCTTTATATGAA
AAGTTTTCTAGTTTTACTGAGTATGAAATTACATCAGAGTAGCATCTTAT
TAAAGTATCTATTTTTAAACATACTGCTTTTCTATTTAAAAATACTTCAT
AAAATATCTAGAAAGAGGGTTTTTGCTCTTTAGTTTTTGTTTTTGTTTCT
GTTTTGTTGTTGTTTTTGTTGTTGATGATGATGATTTTTGTTTTGTTTTG
TTTTAGGTTGTTTTGGNTTTTGNNTNNTNNNNNNNNNNNNNNNNNNNNNN
NNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNTTNNNTNNNTNN
NNNTNNTNTTTTTTTTTNNNTTTTTTTTNTNTTTTTTTTTNTNTTTTTTT
TNTTTTTTTNNTTTNTTTTTTNTNTNTNNNTTNTTTTTTTTTTTTTTTTT
TTTTNNTNTNTTTTTTTTNTTTTTNTTNTTNNTTTNNNNTTTTTNNTNNT
TNNNTTTTTTTTTTT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTT
TTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATA
TATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGTCTCTTTGTCTTATTGGTTTTGTTCATTTCCATC
ACCTGTTTGTATGTTTTTTCCTCTTTTTCTGTAAGGACTTCTACCTGTTT
GATTGTGTTTTCCTGTTTTTCTTTAAGGACTTGTAACTCTTTAGCAGTGT
TCTCCTGTATTTCTTTAAGTGATTTATTAAAGTCCTTCTTGATGTCCTCT
ACCATCATCATGAGATATGCTTTTAAATCTAGGTCTAGGTTTTCAGGTGT
GTTGGGGTGCCCTGGACTGGGCGAAGTGGGAGTGCTGGGTTCTGATGATG
GTGAGTGGGCTTGGTTCCTGTTAGTANGATTCCTACATTTACCTTTCGCC
ATCTGGNAATCTCTGGAGTTAGTAGTTATAGTTGACTCTGTTTATAGATT
GTTCTTCCGGTGATTCTGGTAACGTCTCTTCACTGGACTGGGAGAAAGAT
TCTCTCCTCTTATTTTATTGCTCAAAATATTTTCTGTTGTGTGCACCTCT
TCACTGAAGGGAGTACAAAATTTGCTTTTGGACCTCACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_g15.b1 MSMg01no376_g15.b1 CHROMAT_FILE:
MSMg01no376_g15.b1 PHD_FILE: MSMg01no376_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:18 2005
         (371 letters)



>mm_chr16_61515231_61516002
          Length = 772

 Score =  451 bits (233), Expect = e-131
 Identities = 248/253 (98%), Gaps = 1/253 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagtattaccattttatacatcatatctttccaatatatataattattgcaaa 64
           |||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaattctgagtattataattctatacatcatatctttccaatatatataattattgcaaa 398

                                                                       
Query: 65  acaaaaaattccaaatata-ttacatcatatatttaaaatgatattgtatagagaagaaa 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 397 acaaaaaattccaaatatatttacatcatatatttaaaatgatattgtatatagaagaaa 338

                                                                       
Query: 124 gcaacaaaacctatactttagctttatatgaaaagttttctagttttactgagtatgaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcaacaaaacctatactttagctttatatgaaaagttttctagttttactgagtatgaaa 278

                                                                       
Query: 184 ttacatcagagtagcatcttattaaagtatctatttttaaacatactgcttttctattta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttacatcagagtagcatcttattaaagtatctatttttaaacatactgcttttctattta 218

                        
Query: 244 aaaatacttcata 256
           |||||||||||||
Sbjct: 217 aaaatacttcata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space:   276206
Effective search space used:   276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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