XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGAGTTTTTGTGTCTTTTGAATATTAGGCTCTTCACAGATGCACACTT
AGTTAATATTCTCTTCTATTCCGTAAATTTTCTCTGCGTTGTGTCCAGAA
GTATTTAGCTTTCTATAACCCTGTTAATTTTCTATGTATGCTTTTGTTTT
CTGTACTGAGGGGGGGCTTCATTCTTGCCCATTACAAATACTTCAAAGCA
CTTCCTCCATGTTTTTTTGGCATTAACTTCACATATTTTCTGTATTTTGA
ATCATTTTTATAACTGATACAAGGTTCTACTGTAAAGAGAAGTTTCTTTG
ATAAGGGTCAAAAACTACACTTATCTGTGAGTAAAAAAATATATATTGAT
TGTTGTTAGGGGTTATGCTGAGTTCAAAAACTAGTGGTTATAGATTCTCC
TCCAACATCCATGTCTCCACTAATCCATTATCATGCACGAGCTTCTTTTG
TTCAATCCAACTGGAGCATTTCCAGTTACCATCAAATTATGTGTGCTACT
GTGGGTTAACATGGTGTTCTGGTCCCTGATATAGTTTATATACCTCATAA
CTGAGTAGGACTGTTGGTAGCATCCTTTTCTTAGATGCTCAACTTCCAGT
ACCATGAGAGGTACTGAAAATGTATATACAAGTAACATTATACAAACTGA
ACATGGTGTGTTTAACAAAGTATGTTTATATATGTATATTCCCATAAAAA
CTAN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTGTTAAT
AGGTTTACTTGGTTTTCTAGAGTCTAACTTCTTGAGTTCTTTGTATATAT
TGGATATTAGCCTTCTATCAGATCTAGCATTGGCAAAGATTTTTTTTTTT
GGTTGATGTTTTGTCTTATTGAAAGTGTCCTTTGCTTTATAGAAGCTTTG
CCATTTTATGAGGTCCCATTTGTTAATTCTTGATCTTATAATACAAGTCA
TTGGTGGTCTGTTCAGGAATTTTTACCCTGTGGTCATATCTTCGAAGCTC
TTCTCCATTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAC
ATTTGAGCTTTGTACAAGGAGATAAAAATGGATCAATTCATATTTTGTAC
ATGTGAACCACCAAATGAGCCAGTACCATTTTTTGAAAATGTTGTCTTTT
TTCCACTGGATGGCTTTAGCTTCTTTGTCAAAAATCAAGTGACCATAGGT
ATGTGGGTTTATTTCAATTCTATTCCATTGATCTATCTGTCTGTCACTGT
ACTGTTACCATGTAATTACCGTGCAATTTTAATCACAATTGCTCTGTAAA
AAAGCTTGAGGTCCGGGATGGTGATTCCACCTGAGGCTCTTTTATTGCAG
ACAATAGGTTTTTGCTATCCATGTTTTCTTTTATTCCCA

Query= MSMg01no376_i04.b1 MSMg01no376_i04.b1 CHROMAT_FILE:
MSMg01no376_i04.b1 PHD_FILE: MSMg01no376_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:25 2005
         (633 letters)



>mm_chr16_27674309_27675340
          Length = 1032

 Score = 1193 bits (617), Expect = 0.0
 Identities = 626/629 (99%), Gaps = 1/629 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgagtttttgtgtcttttgaatattaggctcttcacagatgcacacttagtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgagtttttgtgtcttttgaatattaggctcttcacagatgcacacttagtt 264

                                                                       
Query: 65  aatattctcttctattccgtaaattttctctgcgttgtgtccagaagtatttagctttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatattctcttctattccgtaaattttctctgcgttgtgtccagaagtatttagctttct 324

                                                                       
Query: 125 ataaccctgttaattttctatgtatgcttttgttttctgtactgagggggggcttcattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaccctgttaattttctatgtatgcttttgttttctgtactgagggggggcttcattc 384

                                                                       
Query: 185 ttgcccattacaaatacttcaaagcacttcctccatgtttttttggcattaacttcacat 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 ttgcccattacaaatacttcaaagcacttcctccatgtttttt-ggcattaacttcacat 443

                                                                       
Query: 245 attttctgtattttgaatcatttttataactgatacaaggttctactgtaaagagaagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttctgtattttgaatcatttttataactgatacaaggttctactgtaaagagaagtt 503

                                                                       
Query: 305 tctttgataagggtcaaaaactacacttatctgtgagtaaaaaaatatatattgattgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctttgataagggtcaaaaactacacttatctgtgagtaaaaaaatatatattgattgtt 563

                                                                       
Query: 365 gttaggggttatgctgagttcaaaaactagtggttatagattctcctccaacatccatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttaggggttatgctgagttcaaaaactagtggttatagattctcctccaacatccatgt 623

                                                                       
Query: 425 ctccactaatccattatcatgcacgagcttcttttgttcaatccaactggagcatttcca 484
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 ctccactaatccagtatcatgcacgatcttcttttgttcaatccaactggagcatttcca 683

                                                                       
Query: 485 gttaccatcaaattatgtgtgctactgtgggttaacatggtgttctggtccctgatatag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gttaccatcaaattatgtgtgctactgtgggttaacatggtgttctggtccctgatatag 743

                                                                       
Query: 545 tttatatacctcataactgagtaggactgttggtagcatccttttcttagatgctcaact 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttatatacctcataactgagtaggactgttggtagcatccttttcttagatgctcaact 803

                                        
Query: 605 tccagtaccatgagaggtactgaaaatgt 633
           |||||||||||||||||||||||||||||
Sbjct: 804 tccagtaccatgagaggtactgaaaatgt 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1032
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1022
Effective search space:   636706
Effective search space used:   636706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)