BAC Information

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BAC

Clone NameMSMg01-378K21
Chromosome16 (Build37)
Map Location 41,479,519 - 41,625,403
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378K21.T7 (MSMg01no378_k21.b1)MSMg01-378K21.TJ (MSMg01no378_k21.g1)
ACCAG483470AG483471
length778787
length of high quality
(start - end)		536 (50 - 585)437 (76 - 512)
definitionCHROMAT_FILE: MSMg01no378_k21.b1 PHD_FILE: MSMg01no378_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:13 2005CHROMAT_FILE: MSMg01no378_k21.g1 PHD_FILE: MSMg01no378_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,479,519 - 41,480,042)(41,624,967 - 41,625,403)
sequence
NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCGGGCATAATGACTAGTTGTTGTGTATAGCATCAAACACAAA
GTAGGCAAACTTTTTTCCTGAGTTAGACTGATTTAAAAACAGTCTCCTAA
AAATTTGTACAACTCAGATAGCCACACTGTCCAAGTTATCCAATGATTAA
CTAATTACAAAAATAAATTAAAAACAAAATGAAGCTCGAGGTCTACAGTC
GGAAAAAGATGAAGAAGTTTTCTAATTCTTAAGTTACCCATGAGGGCTCT
CCAGTTCCCAGAGAAGATGAATATGAAAGAAAACCTTATCCATCAAGTAA
TGATAATATATGCATCTAACAGTTTAATGTGTTGTGAATATATTTCTAAG
ACATTATTAACATGTTCAGATTAGTTCCAGACCACAGCAAAAATCATTGG
ATGGGAAAAAGAGGTAAAGGTTTGTATCACCATTTTTACAGATAATTTAT
TACAAAAAATATGAAAACTTTAAGAAGCATTAGTTTTGCTTTCTATCCCT
TGAATATTTGTATATGAGCTCATATATGAATGTCCTGGGAAGACGTACAG
AAAATATGCCTCAGGGATTCTCTTGGAGTTCTATATACCATACATGTCTG
ATTCCCGCCCGAAATTATTATTCATACCTGGCTGAGGAATCATAAAAACA
TTATTTTTTCCGGGAAGATATATTAGGACCATCCTTTCCTCTTTTATGGA
AAAAATAAAAATTCTTTTGCAAACCAAN

NCCGATGCAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAATGATAGTGATCAGCTATAGTT
TGACCTCTGGTTAATCAGAGTGTTATACCTAAGCTAAAATATAGGGATCA
CTCAACAGCTGCATCTGCAGGCAAACCAAGAGGAAATGAGGGTTAATAAC
GCTGCATGCCTACGAATGTTATTAAGCGATGAAAAGGGTTCAGTGACCTA
ACTGAGAAAATTCAGACAAAGATAAATTATATTCATCTACTCTTCCAGTA
AATTATTCAAAAATGATCAATTAACTCTGGCTAGTTCTATGAACAGGAGT
CATCATTTGAAATATATAATTATGATACTTGACAATATTTAATTGAGCGT
CATTCCTTGGTATCGTTACTTAATTGCTTCATGTGAGGAAGTTTGATTCC
TTAGCGGGCTCTCCTATCCTTGAAGACAGTTCTCACCTAACAGATTCTAT
CAGAAATCCCCACTGATTCCACTCTATGCAGGGGACACATTAATTGAATT
GTTACCAACAAATCTTTAAAAATAAACTGGAATCAAAGGTAGCGATGCAA
AAAGGGGAGAAAGAAGCCAAACGGTGGAATGGGGGTTATAAGAAATCCCG
AAAAATTGTCTGTAACCCTTTACCCTCACCATATACGGGGCACGGGGCTC
CCCTTTTAAACTTGTGCCTTATATTTCTTCCTTATAAAACCACCCCTTTT
TTTCCTTGTGGTTCCCTTCCCCACTTAACAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_k21.b1 MSMg01no378_k21.b1 CHROMAT_FILE:
MSMg01no378_k21.b1 PHD_FILE: MSMg01no378_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:13 2005
         (536 letters)



>mm_chr16_41479308_41480243
          Length = 936

 Score =  936 bits (484), Expect = 0.0
 Identities = 514/524 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  ggcataatgactagttgttgtgtatagcatcaaacacaaagtaggcaaacttttttcctg 71
           |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ggcataatgattaattgtcgtgtatagcatcaaacacaaagtaggcaaacttttttcctg 271

                                                                       
Query: 72  agttagactgatttaaaaacagtctcctaaaaatttgtacaactcagatagccacactgt 131
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 272 agttagactgatttaaaaacagtctcctaaaaatttgtacaactcagatagccacactct 331

                                                                       
Query: 132 ccaagttatccaatgattaactaattacaaaaataaattaaaaacaaaatgaagctcgag 191
           ||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 332 ccatgttatccgatgaataactaattacaaaaataaattaaaaacaaaatgaagctcgaa 391

                                                                       
Query: 192 gtctacagtcggaaaaagatgaagaagttttctaattcttaagttacccatgagggctct 251
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtctacagttggaaaaagatgaagaagttttctaattcttaagttacccatgagggctct 451

                                                                       
Query: 252 ccagttcccagagaagatgaatatgaaagaaaaccttatccatcaagtaatgataatata 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccagttcccagagaagatgaatatgaaagaaaaccttatccatcaagtaatgataatata 511

                                                                       
Query: 312 tgcatctaacagtttaatgtgttgtgaatatatttctaagacattattaacatgttcaga 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgcatctaacagtttaatgtgttgtgaatatatttctaagacattattaacatgttcaga 571

                                                                       
Query: 372 ttagttccagaccacagcaaaaatcattggatgggaaaaagaggtaaaggtttgtatcac 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttagttccagaccacagcaaaaatcattggatgggaaaaagaggtaaaggtttgtatcac 631

                                                                       
Query: 432 catttttacagataatttattacaaaaaatatgaaaactttaagaagcattagttttgct 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 catttttacagataatttattacaaaaaatatgaaaactttaagaagcattagttttgct 691

                                                       
Query: 492 ttctatcccttgaatatttgtatatgagctcatatatgaatgtc 535
           |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 692 ttctatcccttgaatatttgtatatgagctcatataagaatgtc 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_k21.g1 MSMg01no378_k21.g1 CHROMAT_FILE:
MSMg01no378_k21.g1 PHD_FILE: MSMg01no378_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:13 2005
         (437 letters)



>mm_chr16_41624767_41625603
          Length = 837

 Score =  806 bits (417), Expect = 0.0
 Identities = 432/437 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatgatagtgatcagctatagtttgacctctggttaatcagagtgttatacctaagct 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agaatgatagtgatcagccatagtttgacctctggttaatcagagtgttatacctaagct 578

                                                                       
Query: 61  aaaatatagggatcactcaacagctgcatctgcaggcaaaccaagaggaaatgagggtta 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaaatatagggatcactcgacagctgcatctgcaggcaaaccaagaggaaatgagggtta 518

                                                                       
Query: 121 ataacgctgcatgcctacgaatgttattaagcgatgaaaagggttcagtgacctaactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ataacgctgcatgcctacgaatgttattaagcgatgaaaagggttcagtgacctaactga 458

                                                                       
Query: 181 gaaaattcagacaaagataaattatattcatctactcttccagtaaattattcaaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaaaattcagacaaagataaattatattcatctactcttccagtaaattattcaaaaatg 398

                                                                       
Query: 241 atcaattaactctggctagttctatgaacaggagtcatcatttgaaatatataattatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atcaattaactctggctagttctatgaacaggagtcatcatttgaaatatataattatga 338

                                                                       
Query: 301 tacttgacaatatttaattgagcgtcattccttggtatcgttacttaattgcttcatgtg 360
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 337 tacttgacaatatttaattgagcgtcgttccttggtatcattacttaattgcttcatgtg 278

                                                                       
Query: 361 aggaagtttgattccttagcgggctctcctatccttgaagacagttctcacctaacagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aggaagtttgattccttagcgggctctcctatccttgaagacagttctcacctaacagat 218

                            
Query: 421 tctatcagaaatcccca 437
           || ||||||||||||||
Sbjct: 217 tccatcagaaatcccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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