BAC Information

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BAC

Clone NameMSMg01-378P07
Chromosome16 (Build37)
Map Location 66,936,414 - 66,937,037
singlet/doubletsinglet
Overlap geneCadm2
Upstream geneLOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378P07.T7 (MSMg01no378_p07.b1)MSMg01-378P07.TJ (MSMg01no378_p07.g1)
ACCAG483682AG483683
length753784
length of high quality
(start - end)
631 (47 - 677)86 (76 - 161)
definitionCHROMAT_FILE: MSMg01no378_p07.b1 PHD_FILE: MSMg01no378_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:34 2005CHROMAT_FILE: MSMg01no378_p07.g1 PHD_FILE: MSMg01no378_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGAGTCTGACTTTGTTAGGATAAGGCTTGTAGAATATTCTAGC
AAATACAGAGGGAGCTTGTGAATTCTTTTTATACCAAGATCAATAACCGT
CTGAATTGGACAGATTAAATTAGCCATGGGCCATTTTGGAAGCAGGAGTA
TAGAGACACATTCTACAAGTCTCTTGTAGCTCTGTTTAAAAAAAAAAGCT
GTTTGTTAAAGTTCCAATAAGGTAGGAAAAGGGGGGAAAGAAGAAGAAGA
AGAGCTCTAAATGGAAAGGTAAACATACTGCTTTAAAATGATGAAGACAA
ATGGCCTTACACAACATGCGCCTTCTCAGAGATAGTAGAGATCAGCTGCA
TTATGTTCTGTGTTTGCCCATCCAAAGGATGTGTGGAAAGCATACTGCTT
GAAATTCAGCTCTGATTTCAAGTTAGCTGCAAAGCCCCATTTCTTAGAAA
ACCCAAGCAAATACTCCGACATGCTCAGTGTGCATCTGATACATTTCAAT
AATTAATTCTTAAGTCAAGAAGGAGTCAGGAAATCAGATGAAGCAGCACG
GTAGGTTGGAAAACTGCCAGTGTCAAAGGGGGAAAAAGATCAGCAATAGA
CAGAGCCTTTTCAAGCTGAAAAAGGGTCAGTATGATACCACTGGGAGCAA
AAATGAAGCCTTGCGTTTTTTTTTTTTATTACTGTTATTTACATAAACCA
CCG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGATCTAGATTGGTTAATCTAAATG
TCCCAGAGAGGCTAATATTTTCACTTCGCTAAATAGTCATTAGTGGCTAT
TCCCTAATGTTTTAGAGATGCCAGGACACATGTTCCATATTTTTATATAT
ATTACTTATTTTAAACTTATATTATTTATATAATTCATACTTGTGAAACT
TTAGATCTATGTGACTACTGACAGGTTATTATTTTTAAGCCATGTTTGAA
AATAACAACCCACCCTTATGTTACTATTTGGTCCACTTTTTTTTATACGC
GACAATGTGAGTAAAGGAATTTACTCACGATCTTGTTGACCCTCACGCTA
AGTACTTCCTTAGTTCCACTGATGAGAAGGTTGAAGTACTAATCCTGTTT
GTTCTGACTTGGGATGTGCTTAACTGTGCGTGGTAGTTTAAAGGTATGTT
TTGACACCTACCCCCTAATGAATTTGTCTGTTATCCACTTTTACAATATG
ATTGTATTCCACCCTCTCGTTTTGGAACGCATACCTTGAATGCTCCCTTA
TTTTTTGCCCCTTTGAGTTTTATAATTTTCTTCTCTTTTGCTTTTTTTAC
CTACCCCTTTTTCCCTTTTTTTATTTACAAATTTGCATTATAAATCTCTA
GCTCCCGTCTTTGCGTTCCATTAGATTCTTACCATCTCTTTCTCCTCTAT
CCTTGCACTTATTCTATTTTTCCCCCCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_p07.b1 MSMg01no378_p07.b1 CHROMAT_FILE:
MSMg01no378_p07.b1 PHD_FILE: MSMg01no378_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:34 2005
         (631 letters)



>mm_chr16_66936210_66937237
          Length = 1028

 Score = 1104 bits (571), Expect = 0.0
 Identities = 613/627 (97%), Gaps = 3/627 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgagtctgactttgttaggataaggcttgtagaatattctagcaaatacagag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagtctgagtttgttaggataaggcttgtagaatattctagcaaatacagag 264

                                                                       
Query: 65  ggagcttgtgaattctttttataccaagatcaataaccgtctgaattggacagattaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggagcttgtgaattctttttataccaagatcaataaccgtctgaattggacagattaaat 324

                                                                       
Query: 125 tagccatgggccattttggaagcaggagtatagagacacattctacaagtctcttgtagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagccatgggccattttggaagcaggagtatagagacacattctacaagtctcttgtagc 384

                                                                       
Query: 185 tctgtttaaaaaaaaaagctgtttgttaaagttccaataaggtaggaaaaggggggaaag 244
           ||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 385 tctgttt-aaaaaaaaatctgtttgttaaagttccaataagataggaaaaagggggaaag 443

                                                                       
Query: 245 aagaagaagaagagctctaaatggaaaggtaaacatactgctttaaaatgatgaagacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagaagaagaagagctctaaatggaaaggtaaacatactgctttaaaatgatgaagacaa 503

                                                                       
Query: 305 atggccttacacaacatgcgccttctcagagatagtagagatcagctgcattatgttctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atggccttacacaacatgcgccttctcagagatagtagagatcagctgcattatgttctg 563

                                                                       
Query: 365 tgtttgcccatccaaaggatgtgtggaaagcatactgcttgaaattcagctctgatttca 424
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 564 tgtttgcccatacaaaggatgtgtggaaagcatactgcttgaaattcagctccgatttca 623

                                                                       
Query: 425 agttagctgcaaagccccatttcttagaaaacccaagcaaatactccgacatgctcagtg 484
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 624 agttagctgcaaagccccatttcttagaaaacccaagcaaatacgccgacatgctcagag 683

                                                                       
Query: 485 tgcatctgatacatttcaataattaattcttaagtcaagaaggagtcaggaaatcagatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgcatctgatacatttcaataattaattcttaagtcaagaaggagtcaggaaatcagatg 743

                                                                       
Query: 545 aagcagcacggtaggttggaaaactgccagtgtcaaagggggaaaaagatcagcaataga 604
           |||||||||||||||| |||||||||||||||  ||||||| ||||| ||||||||||||
Sbjct: 744 aagcagcacggtaggtcggaaaactgccagtgggaaagggg-aaaaa-atcagcaataga 801

                                      
Query: 605 cagagccttttcaagctgaaaaagggt 631
           |||||||||||||||||||||||||||
Sbjct: 802 cagagccttttcaagctgaaaaagggt 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1028
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1018
Effective search space:   632178
Effective search space used:   632178
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)