BAC Information

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BAC

Clone NameMSMg01-379N19
Chromosome16 (Build37)
Map Location 18,827,260 - 18,827,737
singlet/doubletsinglet
Overlap geneUfd1l
Upstream geneCar15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l
Downstream gene2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379N19.T7 (MSMg01no379_n19.b1)MSMg01-379N19.TJ (MSMg01no379_n19.g1)
ACCAG484373AG484374
length769772
length of high quality
(start - end)		485 (40 - 524)478 (70 - 547)
definitionCHROMAT_FILE: MSMg01no379_n19.b1 PHD_FILE: MSMg01no379_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:44 2005CHROMAT_FILE: MSMg01no379_n19.g1 PHD_FILE: MSMg01no379_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TCTGTGTAAATACAGACAAGGAGAAAGGTTAGTTCCAAGGAGGACTAAGA
TTTGCTTCTGACGATCAAGAGGAAGGTAGGAAGAGACAGCAGTGCCTTTT
TGATAATTGTCTGGTATACACTGCTTTGCCCTCTATGTACCTGCTAGGAG
GGAACACAAAGTAAAAACACTGGTCATGGGGTAGGAACTGTGGGTACTGG
CCTAGCCTTAGACTCCTTCTGAAAGTGCTCCAATGCATCCTATCTCCTGT
TCTCTTCCTGGTCACACATACAGTAGACAACTAACACATCCCCACTCCTA
CCAGGTAGCCACCAAAAGAGAGTCCACCGTGAATCCCTGGACAGATACCA
TTGTGCTCTACCAGTGTCAGAGAGCGAGTGAGAACATGAGCCTATTCAGT
AGCTGCTGGTTTGTCTCCAACACTGGAATGAGGCTCTACTGCGTCCTATG
CTTTGACACAAAGCCCATGTCATGTGTCAAACCTTTCTTAGTAAATGGNC
AATACTCATCANGGACAAGCTAGGACAGACCTACCTTTTGATGTCTCCAG
GCTTGATTGTGGAAGGAACTGGGCTCAACCCCCTTTTTTCTTCCATCCAG
GCTATTCCCCAAACAGAAAAGGCCTAGGAAAGGAAGCCAAGAGGCGCTTG
TTCATCCCAAAAAGGGAAAACAGGACCTCTGTGTTAAACCCCCAAAAAAA
AGAACTGGTGTCTTCCCCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGAGTGAACATAGGAAATCAAAAAGGACT
GACACTGAAATGAAGATGGAATTGAAAACCACAATATCCCAACTAGAAAA
CTCAGAGGAAATCCTTAAAGTCGAATAAATAAATCAGAAAGGAAAATATT
GTGTCTTGAAGATAAAATAGAAGATCTAGACCAAATAAGCTAAATAAATA
AATAAGCATTAAAAAACACAGAAATAGGTACACACAAGAAATGTAGACTA
TCATGATAAAAAACAAAATATTTCAAATTATAAGGAATAAATGAAGAAGC
ATTCCAAGTCAATGACATAGACCATTTCAACCAGATCATAGAAGAAAAAT
TCCCCAAACTAAGAAAAGTCACCAGTACAGATACAAGAATACCAAGAAGA
CAATACCAGAAGAGAAAATCCCCATGGAAAATCATACTTAATAAATGTAC
ATAACAAAAGAGTATATTAACAGCTGCAATAGGAAAAAAAAATACNAGAC
ACATATGAAGAAAAACCTGTAAAGATGACAGCTGATTTCTNCATGGAAAC
CTTGAAGGCAGAAGTGTCTGGAGCAATGCATGCTGAGTCCTAAGAACAAT
GACAGCCACCTAAAGTATATACCCAGCAAGCTAATGCCCTGGTTGAAGGA
GAAGAAAATTTTCACGATAAGCCTTAAAAATGTAATTCAGTCTTGCCCCA
GCCCCTGTCCTAAGAACTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_n19.b1 MSMg01no379_n19.b1 CHROMAT_FILE:
MSMg01no379_n19.b1 PHD_FILE: MSMg01no379_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:44 2005
         (485 letters)



>mm_chr16_18827057_18827937
          Length = 881

 Score =  880 bits (455), Expect = 0.0
 Identities = 474/483 (98%), Gaps = 6/483 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctctgtgtaaa-tacagacaaggagaaaggttagttccaaggaggactaagat 62
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaattcctctgtgaaaattacagacaaggagaaaggttagttccaaggaggactaagat 622

                                                                       
Query: 63  ttgcttctgacgatcaagaggaaggtaggaagagacagcagtgcctttttgataattgtc 122
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcttctgacaatcaagaggaaggtaggaagagacagcagtgcctttttgataattgtc 562

                                                                       
Query: 123 tggtatacactgctttgccctctatgtacctgctaggagggaacacaaagtaaaaacact 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtatacactgctttgccctctatgtacctgctaggagggaacacaaagtaaaaacact 502

                                                                       
Query: 183 ggtcatggggtaggaactgtgggtactggcctagccttagactccttctgaaagtgctcc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtcatggggtaggaactgtgggtactggcctagccttagactccttctgaaagtgctcc 442

                                                                       
Query: 243 aatgcatcctatctcctgttctcttcctggtcacacatacagtagacaactaacacatcc 302
           |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||
Sbjct: 441 aatgcatcctatctcctgttctcttcctggtcacaca-----tagacaactaacacatcc 387

                                                                       
Query: 303 ccactcctaccaggtagccaccaaaagagagtccaccgtgaatccctggacagataccat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccactcctaccaggtagccaccaaaagagagtccaccgtgaatccctggacagataccat 327

                                                                       
Query: 363 tgtgctctaccagtgtcagagagcgagtgagaacatgagcctattcagtagctgctggtt 422
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 326 tgtgctctaccagtgtcagagagcgagtgagaacgtgagcctattcagtagctgctggtt 267

                                                                       
Query: 423 tgtctccaacactggaatgaggctctactgcgtcctatgctttgacacaaagcccatgtc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtctccaacactggaatgaggctctactgcgtcctatgctttgacacaaagcccatgtc 207

              
Query: 483 atg 485
           |||
Sbjct: 206 atg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 881
Length adjustment: 10
Effective length of query: 475
Effective length of database: 871
Effective search space:   413725
Effective search space used:   413725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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