Query= MSMg01no380_l05.b1 MSMg01no380_l05.b1 CHROMAT_FILE:
MSMg01no380_l05.b1 PHD_FILE: MSMg01no380_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:51 2005
(544 letters)
>mm_chr16_61031497_61032438
Length = 942
Score = 994 bits (514), Expect = 0.0
Identities = 533/540 (98%), Gaps = 4/540 (0%)
Strand = Plus / Plus
Query: 6 ggaattcaatcaata-tttctctatgccaagattttcccaccactgatcataaatggggt 64
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcaatcaatagttt-tctatgccaagattttcccaccactgatcataaatggggt 264
Query: 65 agtttaccattaaagggtaaagttaatgagaaactgaaattcatatgattgactctgtgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtttaccattaaagggtaaagttaatgagaaactgaaattcatatgattgactctgtgt 324
Query: 125 aattaaacctacagccagatgttgatttgcgaattcatttggaatgtattcgtagttata 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 aattaaacctacagccagatgttgatatgcgaattcatttggaatgtattcgtagttata 384
Query: 185 tgatatactgttgcattcattatgtttacacttatgccttggtatgctttgatatttatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatatactgttgcattcattatgtttacacttatgccttggtatgctttgatatttatc 444
Query: 245 tgtttataaagttttatattgtgtactaacatgaattactgaataagttgatttcattta 304
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtttat--agttttatattgtgtactaacatgaattactgaataagttgatttcattta 502
Query: 305 ttataaacactacatctaatgttaatataagctaaaagtaaaatgacacctaaaagtttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 ttataaacactacatctaatgttaatataagctaaaagtaaaatgacacctaaaattttc 562
Query: 365 actatcatctaataggtgattccataaaaattattaatgaacaaggctatttatagcccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 actatcatctaataggtgattccataaaaattattaatgaacaaggctatttatagcccc 622
Query: 425 atctacgtggctgtagccattgatatataattattagatgatttgtttgcataataatta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atctacgtggctgtagccattgatatataattattagatgatttgtttgcataataatta 682
Query: 485 ttataaagctataggactgtgtgttgctaccagaataagtgaatgacaccttttatcaag 544
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 683 ttataaagctataggactgtgtgttgctacaagaataagtgaatgacaccttttatcaag 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 942
Length adjustment: 10
Effective length of query: 534
Effective length of database: 932
Effective search space: 497688
Effective search space used: 497688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_l05.g1 MSMg01no380_l05.g1 CHROMAT_FILE:
MSMg01no380_l05.g1 PHD_FILE: MSMg01no380_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:51 2005
(480 letters)
>mm_chr16_61199297_61200176
Length = 880
Score = 891 bits (461), Expect = 0.0
Identities = 473/477 (99%)
Strand = Plus / Minus
Query: 1 cactggataaaattagatttgccccactacttctctgcacaattcttgaattgcttgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cactggataaaattagatttgccccactacttctctgcacaattcttgaattgcttgtta 618
Query: 61 attttcagaagtagaatttcccttcataaaacttttagcttttctaacattacagaaata 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 attttcagaagtagaattttccttcataaaacttttagcttttctaacattacagaaata 558
Query: 121 aaatgtattcaatatactgagcatctttggtgctaaaatacatgagagataaatgatcag 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 557 aaatgtattcaatatactgagcatctttggtgctaaaatacaggagagataaatgatcag 498
Query: 181 tgcataggtttcattcttccattgaatatgtagaactcatgtattaacccttgtgtctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgcataggtttcattcttccattgaatatgtagaactcatgtattaacccttgtgtctca 438
Query: 241 tctgttcaggttcttaggagcatgataaaaagcaatttagactttcttaacctttgcgct 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 437 tctgttcaggttcttaggagcatgataaaaagcaatttagactttcttaacctttgggct 378
Query: 301 ctattagatttctaagctgaattacattagaatgaatatccttttctctttgttatttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctattagatttctaagctgaattacattagaatgaatatccttttctctttgttatttta 318
Query: 361 gtaattccctgtgggtagtagagataggagtcttggggattccaataaccttttgtaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtaattccctgtgggtagtagagataggagtcttggggattccaataaccttttgtaaga 258
Query: 421 tataaaaaaatatttaattcgttagaagttcattttttataaatctttaaatgttgg 477
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 257 tataaaaaaatatttaattcgttagaagttcattttttaaaaatctttaaatgttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
