BAC Information

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BAC

Clone NameMSMg01-381B21
Chromosome16 (Build37)
Map Location 66,741,358 - 66,741,758
singlet/doubletsinglet
Overlap geneCadm2
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381B21.T7 (MSMg01no381_b21.b1)MSMg01-381B21.TJ (MSMg01no381_b21.g1)
ACCAG485333AG485334
length1,064775
length of high quality
(start - end)		---403 (68 - 470)
definitionCHROMAT_FILE: MSMg01no381_b21.b1 PHD_FILE: MSMg01no381_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:25 2005CHROMAT_FILE: MSMg01no381_b21.g1 PHD_FILE: MSMg01no381_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATGGCGGGGAGAGACCACTTGCTTAGCGGGCAGAGGGGTAGCAAGGTCA
CGGCGAGAGCAGACTCAGAGAATTTGAGGAGAGAGACATATACAAACGCA
ATATAACGCGAGCGTCCGGAAGGGAGAGCCAATATAGATGTGGACGGCAG
TAAACAACATAATAGCGACGCCCGCGCGCGCGACCGGCTAATCCGAGGAG
AAAAAGGGGCGCAAGATAGCGGATATTACCGCTACATACGCACGTTTATC
CCGCGCCGGCGCCCATAACTAATCGTCGGTAATAGCGAACGAAAAACGCC
CTGACCATATGCCGAGGCGCGCGCATATTCTACACGGACCGCCGCGGAAA
CCGTTAGGTACGTATCGCAATATATAGCGCAAAAGACCATTGTGTGGCGC
GTATGTGGTGGAGTATGACGCAACTTACAGTGGGATGGCGAGACATGACA
TGTAGTTGAGCCTTTAGCGTGCGGGGGATTTATGTGGAGGAAAGGAACAA
CAAACAGTGACGNTGAGAGCCACTGCACACCACTTTCTACCAATCCCCGC
GCGCCACCGATTTACCCGCACAAATTAACCGGAGGTCCGTAACGAAAGTG
CGCCGTTTACCGCACGGGGCGGGATAATTATTGCGCGGATAGCGAATGAG
GGCTTATATTATTTTTGGGCACCGCGGGGGGCGCCGGCGCGGCGAATTGG
TGTGGGCGGTGTTGCGCGCGCGCGCGCGTTGTGTGTATATTGGACGTAGC
CCGGAACAGTCGCGGGTTATTTACGGGGCGCACGCGCCCATGNTCTACAC
GTGCTATCGCCGTTAATGTGACGACAGCGGAATATCGCGCCCGCAAAAAG
GTTTAACCGGGAGTTGCGACCTGTTGTGACTTGGCCGCGGTAAAATATTC
GGACGCATACGAACTATGAAGTAGTTGAGGATGCGCCAGCTAATAATTTA
TATTACGCCGCGTCGACCGGGAGCGCGGACGCGAAAATATGCAACAACAG
GTGTATTTATACGAGCGCGGATCACAATCGCGCGGGCGCGTATAATACGC
AGTGGTGGATAATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATCTTTTTAAGATGAAAATGCACTGTGTAAAT
TGACTTTTTTCAGCTGTCATGGTATAATCCATGCATATATTTCCTACTAA
CATAAATGTTCCTCCAGATCTAGATGAATTAGGGGTCAAATATAAAAGGA
CAAAAACCTTTATTCAGAATCTGTCTTCAAATTTTCAACATCAATAATAT
ATTTTCTCTATTTCTCCATAACCTTTCTCTCATCCACAGTCTATAAAATG
GTAAACACAATGATGAAATCAATGTCACTAAAGTCTTCTTAGTTGGCTTA
TGTGCAAAACTAGTTAGGCTACAGTTTTCTACTCTATACAGAGTCCTTTT
ACCAAAAAATATGGTCCTGAGTTGGCTCATTTTTTTGATAATTCAAGCAT
TATGTCATGACCTTTGAAGGAGAGTTTTGGCTCTGAGTTTCAGAAACTAT
AGATTTGTACATAAAATATACTTATAGTGGCTTGGCTTGTAAATGTCACA
AATAACACATTATATACTGTTTTTGATCCTAAATAAACCTTGCTCCATTC
AATCTTCTAGGCCAGGATCTGTGGATAAACTAAAAAGAAGGTCCCACTCG
GTCTTTGCCTTTCTTGACCCCCGAAAAGGATGGAAGGTTTTTATGGAACC
CAAAAGATGGGGGAAAAAAAATCAAACTTTTTTCTTTTAAAAAAGGTGGC
GTAGTTTTAATCCCCGTTGGAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_b21.g1 MSMg01no381_b21.g1 CHROMAT_FILE:
MSMg01no381_b21.g1 PHD_FILE: MSMg01no381_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:25 2005
         (403 letters)



>mm_chr16_66741158_66741958
          Length = 801

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%), Gaps = 2/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctttttaagatgaaaatgcactgtgtaaattgacttttttcagctgtcatggtataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 catctttttaagatgaaaatgcactgtgtaaattgacttttttcagctgtcatggtataa 542

                                                                       
Query: 61  tccatgcatatatttcctactaacataaatgttcctccagatctagatgaattaggggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tccatgcatatatttcctactaacataaatgttcctccagatctagatgaattaggggtc 482

                                                                       
Query: 121 aaatataaaaggacaaaaacctttattcagaatctgtcttcaaattttcaacatcaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaatataaaaggacaaaaacctttattcagaatctgtcttcaaattttcaacatcaataa 422

                                                                       
Query: 181 tatattttctctatttctccataacctttctctcatccacagtctataaaatggtaaaca 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 t-tattttctctatttctccataacctttctctcatccacagtctataaaatggtaaaca 363

                                                                       
Query: 241 caatgatgaaatcaatgtcactaaagtcttcttagttggcttatgtgcaaaactagttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caatgatgaaatcaatgtcactaaagtcttcttagttggcttatgtgcaaaactagttag 303

                                                                       
Query: 301 gctacagttttctactctatacagagtccttttaccaaaaaatatggtcctgagttggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gctacagttttctactctatacagagtccttttaccaaaaaatatggtcctgagttggct 243

                                                      
Query: 361 catttttttgataattcaagcattatgtcatgacctttgaagg 403
           || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 242 ca-ttttttgataattcaagcattatgtcatgacccttgaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 801
Length adjustment: 9
Effective length of query: 394
Effective length of database: 792
Effective search space:   312048
Effective search space used:   312048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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