BAC Information

Click to search

BAC

Clone NameMSMg01-381E02
Chromosome16 (Build37)
Map Location 44,604,622 - 44,605,027
singlet/doubletsinglet
Overlap genenone
Upstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
Downstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381E02.T7 (MSMg01no381_e02.b1)MSMg01-381E02.TJ (MSMg01no381_e02.g1)
ACCAG485439AG485440
length718716
length of high quality
(start - end)		407 (36 - 442)469 (80 - 548)
definitionCHROMAT_FILE: MSMg01no381_e02.b1 PHD_FILE: MSMg01no381_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:36 2005CHROMAT_FILE: MSMg01no381_e02.g1 PHD_FILE: MSMg01no381_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAG
ATTCCAAAGTTGATAATAACTCCAGGAGGTTATCTAAAATGAGAGATGAT
GCAATTCAAATGAGGGCTTTCGGAGACGTTTCCCAGTTGGTTCTATCGTG
GATAAGGCTTCAGAAGACATTTATTAAGGATCGAGCAGTATAAACCAGTG
CTACTTCTACGACTGCTCTCTTGGGGTTTTTAAAGAACAGGGGATTCTTG
ACGGTGTAAGGAAAATCTCCATTCACTCTTTTTCTTGTGAAAAGATCATT
AATTTTAGTCCAGGAAATGCAGGTACAATATACAGATTAATGGGGATTTG
AGAAAAATATAAAGCCTAAAATCTACCCATAAGCACTGGCTGAGAAGCTT
TGTGTGAGACCTGAATAGCAGGAGAGAGCTGATCCTTAGACAGCACACTG
TGGAGGGTTTTGGCATCTGGCAGAAAGAAGGCATCCCAGGTTGCAGAAGG
TTAGGGGAGAGTGTGCATACCCTCAGGGATCATTTCCTGCAGATGTAGCC
CCCTGGGGAAAGCCATATGTGCTATACTGTGTCTAACCTTATGCCCGACC
CCCCTCTTCTTTATCCCGTGAAAATGTCTTTCCTATGTACACCAATGTTT
TTGCCCTCCGCATTCTGTTTTTGTCTCTCCTCCCCATCCCTCTTTCCGTG
CCTTTCCCCCTCCGTGTT

CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTA
TCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAG
ATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATT
GATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTA
CTTGGTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCG
AGAATTTTATTAAGGATTTTTGCATCTATATTCATTAGAGAAATTGGTCT
GAATTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAA
TAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTG
TGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATA
GAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGAGAGAC
TATTAATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTATAAGG
CCAACTTGATCCTGATTCACCTTTGTTACCCGGTATTTGTTCAGAAATTT
GTCCCTTTCTTCCAGTTTTTTCCAGCTTTGTTGAATATTAACCTCTCGCC
CAAAGATCCTGACGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_e02.b1 MSMg01no381_e02.b1 CHROMAT_FILE:
MSMg01no381_e02.b1 PHD_FILE: MSMg01no381_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:36 2005
         (407 letters)



>mm_chr16_44604419_44605227
          Length = 809

 Score =  694 bits (359), Expect = 0.0
 Identities = 395/407 (97%), Gaps = 4/407 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcagattccaaagttgataataactccaggaggttatctaaaatgagagatg 63
           |||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcagagagcaaaattgataataactccaggaggttatctaaaatgagagatg 263

                                                                       
Query: 64  atgcaattcaaatgagggctttcggagacgtttcccagttggttctatcgtggataaggc 123
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 atgcaattcaaatgagggctttcggagacgtttcccagttggttctattgtggataaggc 323

                                                                       
Query: 124 ttcagaagacatttattaaggatcgagcagtataaaccagtgctacttctacgactgctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 ttcagaagacatttattaaggatcgagcagtataaaccagtgctacttctacgactgctg 383

                                                                       
Query: 184 tcttggggtttttaaagaacaggggattcttgacggtgtaaggaaaatctccattcactc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttggggtttttaaagaacaggggattcttgacggtgtaaggaaaatctccattcactc 443

                                                                       
Query: 244 tttttcttgtgaaaagatcattaattttagtccaggaaatgcaggtacaatat-acagat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 tttttcttgtgaaaagatcattaattttagtccaggaaatgcaggtacaatattacagat 503

                                                                       
Query: 303 taatggggatttgagaaaaatataaagcctaaaatctacccataagcact-ggctgagaa 361
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 taatggggacttgagaaaaatataaagcctaaaatctacccataagcacttggctgagaa 563

                                                          
Query: 362 gctttgtgtgagacctgaatagcaggagaga-gctgatccttagaca 407
           |||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 564 gctttgtgtgagacctgaatagcaggag-gaagctgagccttagaca 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 809
Length adjustment: 9
Effective length of query: 398
Effective length of database: 800
Effective search space:   318400
Effective search space used:   318400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |