Query= MSMg01no381_m03.b1 MSMg01no381_m03.b1 CHROMAT_FILE:
MSMg01no381_m03.b1 PHD_FILE: MSMg01no381_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:16 2005
(246 letters)
>mm_chr16_33596204_33596849
Length = 646
Score = 435 bits (225), Expect = e-126
Identities = 237/241 (98%)
Strand = Plus / Minus
Query: 5 ggaaactggagtgaaaggttcctgctagctgaccacagtggtgaccatcagtcatccaag 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggaaactggagtgaaagattcctgctagctgaccacagtggtgaccatcagtcatccaag 301
Query: 65 catttggaggacagaggcaggaagatcaactgtatagcaagttccaggggggtgggactc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 catttggaggacagaggcaggaagatcaactgtatagcaagttccaggggggtgggactc 241
Query: 125 cggccagcatgagcacagcgaccatggcgactatgtgaccatgcaaccatggctctggca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cggccagcatgagcacagcgaccatggcgactatgtgaccatgcaaccatggctctggca 181
Query: 185 ggctgtggccttctcccccatcccctctgccttgctaaaaaccattatattatattccta 244
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct: 180 ggctgtggccttctcccccatcccctttgccttgctaaaaaccattagattacattccta 121
Query: 245 a 245
|
Sbjct: 120 a 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no381_m03.g1 MSMg01no381_m03.g1 CHROMAT_FILE:
MSMg01no381_m03.g1 PHD_FILE: MSMg01no381_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:16 2005
(586 letters)
>mm_chr16_33429223_33430205
Length = 983
Score = 1094 bits (566), Expect = 0.0
Identities = 580/586 (98%), Gaps = 3/586 (0%)
Strand = Plus / Plus
Query: 1 agttttctaatggaatgaataatttgaatttgtgctagtaccaaatgtaagctacagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttctaatggaatgaataatttgaatttgtgctagtaccaaatgtaagctacagtat 260
Query: 61 aactgggaccactgtgtacagccccaactccatccttctcatctgattaagataaattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgggaccactgtgtacagccccaactccatccttctcatctgattaagataaattat 320
Query: 121 acttgttccttaaatagtttgagttggcaaaaatgcaatattttagattctcagtgccac 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 acttgttccttaaatagtttgagttggcaaaaatgcaatgttttagattctcagtgccac 380
Query: 181 tattttctggttgtgtcattttagaaaacattttgataaatagttggaatatatttttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattttctggttgtgtcattttagaaaacattttgataaatagttggaatatatttttgt 440
Query: 241 gcttagatactaggtttttgaatggttttcctgttaagtcaaaatgtctgttaacttttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttagatactaggtttttgaatggttttcctgttaagtcaaaatgtctgttaacttttc 500
Query: 301 ttaaatatttatagattatttttctatggttaaaaatggtcacttttatctaagttgtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaatatttatagattatttttctatggttaaaaatggtcacttttatctaagttgtca 560
Query: 361 tatttacaaaatggagaactttatcatacttaataactttattactatctgttaaatgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttacaaaatggagaactttatcatacttaataactttattactatctgttaaatg-- 618
Query: 421 gtttatcacttcagtgtcttctgttgctgctggcactgaacatggctctcactaggctgt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 619 -tttatcacttcagtgtcttctgttgctgctggcactgaacatggctctcactagactgt 677
Query: 481 tttgaaatactaacacttaaaaatagttttcaagaaagactttctaatatgcaaaatgtg 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 678 tttgaaatactaacacttaaaaatagttttcaagaaagactttgtaatatgcaaaatgtg 737
Query: 541 cccttcacacacttacctcaaggatatcggcacgtacatattttgt 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cccttcacacacttacctcaaggatatcggcacgtacatattttgt 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 983
Length adjustment: 10
Effective length of query: 576
Effective length of database: 973
Effective search space: 560448
Effective search space used: 560448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
