BAC Information

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BAC

Clone NameMSMg01-382G16
Chromosome16 (Build37)
Map Location 93,461,101 - 93,624,749
singlet/doubletdoublet
Overlap geneSetd4, LOC670912, Cbr1
Upstream geneDscr1, 2410124H12Rik, Clic6, Runx1, EG666023, LOC100040747
Downstream geneEG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382G16.T7 (MSMg01no382_g16.b1)MSMg01-382G16.TJ (MSMg01no382_g16.g1)
ACCAG486325AG486326
length752764
length of high quality
(start - end)		524 (54 - 577)507 (71 - 577)
definitionCHROMAT_FILE: MSMg01no382_g16.b1 PHD_FILE: MSMg01no382_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:09 2005CHROMAT_FILE: MSMg01no382_g16.g1 PHD_FILE: MSMg01no382_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(93,461,101 - 93,461,624)(93,624,287 - 93,624,749)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCTATTC
TCACTCGGCTATGAGGTGAGGCAGAACAGCAAGGTCGGGGGCACAGGGTA
GAGCTGAGGAATTTACCTCACAGCTGCCAGGAGGCAAAGAGAATGGGGGA
AGGAGGCTGAGGACAAACCACACCCTTCACGGGTTCCTGAAGTACCTTCT
CAGGCAAGGTCCCATCTCCTCAACTTTCCACGGCTTTCAATTGTCCACCC
CCACAGATGACGTCTGAGACCTCACTATCCAATCATCTCCCGAAGGCCTC
ATCTAGAACGCTAAGCATCAGGGAGCGAACATTAGGACACTTCTTACCCA
GCCACAGTCCTGGGGTACAGAGGATGGCAGACTTTGCCATGTTTAGGAGT
ACAGGAATAATTCTAGGTCCACTACCAACTGCGAGATCCTGATAGCTATT
AAACCTGGCTGTCGATCACAGACACCACTCATGGGCTGGAATGTTTCCTC
CCTCGTTCATTCTTTAATTGACCCTCGGCTCTGCATTGTGAAGTATCCAA
CTGCCCTGAATCTGAAGGCTGGAAGGTTTTTCAGTGTGCCTTGCTCTTCA
CCCCTTAAAACATCCGCAGTGACTCATTCTCAAACCCAGGCCCGCACTGA
TTCACAGTCCTGGGGCTGACTTGCGAAAGCGCTTATTCCCCCGGTGCTTC
GGAAGCCTTCTCCAAGGGCACTTTGCCCCTAAGACTGATAAACTGTGGTC
CC

ATGTAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCTTTGAATCCATGTGGTCTTGGAGTTTT
GCCTTGTTGGAGGATTTTGTGAAAAATTACTTCCTTATCTTGTTGATGGT
TTAAGCTCTTTAAATCATTTTGCTTTAATGTTGGCATGTCGTGGGTGTTA
AGGCCTAAGTAACTCTTACTTGGCTAGCCTGCCATTATAAGGAAGATTTC
TCACAGGTTTCTGCTGTTACTGGACCCTTCCTAATGCCAGGATAGGTGAC
ATATTCTGTTCTGTCTGTGCCCATGGAAACCAATCACGACAGAAGTCATG
GAACTGCTCTGCATAGTTACCCACAACAAGACTGGACCAGAAGCAACCAC
CACCAGCACTTCCTGTACCTGTGTACAAGATTTTAAGATACAAACTGCCC
CTGGGACAGACCCCAACATAAGAGAGACACAAACCATTTGGAATAAGACT
TCCATTTTGAGTAGTGCTCTTGTAAAGATCAGGTTCCCAAGCCCTTCCTG
GGAACGGACACCTACTTGGCAGAAAGAGACATGGACGTGTGTAACTGACA
TCCTAGTTGGCAAGTTAAGACATGAATCTGAGANCAGTCCTGTTCAGTTA
GATAAGTGAGGACTTGAATGTTATCANGCAAGGGAAGACCCCTGCCCCCT
TTGATTACTCCCACCAATGGGAGCCAGAAGAAGATCCCACAAAGATGTGT
CCCTTTGGAAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_g16.b1 MSMg01no382_g16.b1 CHROMAT_FILE:
MSMg01no382_g16.b1 PHD_FILE: MSMg01no382_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:09 2005
         (524 letters)



>mm_chr16_93460901_93461824
          Length = 924

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcggctatgaggtgaggcagaacagcaaggtcgggggcacagggtagagctgaggaatt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ctcggctatgaggtgaggcagaacagcaaggtcaggggcacagggtagagctgaggaatt 260

                                                                       
Query: 61  tacctcacagctgccaggaggcaaagagaatgggggaaggaggctgaggacaaaccacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctcacagctgccaggaggcaaagagaatgggggaaggaggctgaggacaaaccacac 320

                                                                       
Query: 121 ccttcacgggttcctgaagtaccttctcaggcaaggtcccatctcctcaactttccacgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttcacgggttcctgaagtaccttctcaggcaaggtcccatctcctcaactttccacgg 380

                                                                       
Query: 181 ctttcaattgtccacccccacagatgacgtctgagacctcactatccaatcatctcccga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcaattgtccacccccacagatgacgtctgagacctcactatccaatcatctcccga 440

                                                                       
Query: 241 aggcctcatctagaacgctaagcatcagggagcgaacattaggacacttcttacccagcc 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcctcatctagaacgctaagcgtcagggagcgaacattaggacacttcttacccagcc 500

                                                                       
Query: 301 acagtcctggggtacagaggatggcagactttgccatgtttaggagtacaggaataattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagtcctggggtacagaggatggcagactttgccatgtttaggagtacaggaataattc 560

                                                                       
Query: 361 taggtccactaccaactgcgagatcctgatagctattaaacctggctgtcgatcacagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggtccactaccaactgcgagatcctgatagctattaaacctggctgtcgatcacagac 620

                                                                       
Query: 421 accactcatgggctggaatgtttcctccctcgttcattctttaattgaccctcggctctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accactcatgggctggaatgtttcctccctcgttcattctttaattgaccctcggctctg 680

                                                       
Query: 481 cattgtgaagtatccaactgccctgaatctgaaggctggaaggt 524
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 cattgtgaagtatccaacttccctgaatctgaaggctggaaggt 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_g16.g1 MSMg01no382_g16.g1 CHROMAT_FILE:
MSMg01no382_g16.g1 PHD_FILE: MSMg01no382_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:09 2005
         (507 letters)



>mm_chr16_93624287_93625193
          Length = 907

 Score =  888 bits (459), Expect = 0.0
 Identities = 462/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttgaatccatgtggtcttggagttttgccttgttggaggattttgtgaaaaattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agctttgaatccatgtggtcttggagttttgccttgttggaggattttgtgaaaaattac 404

                                                                       
Query: 61  ttccttatcttgttgatggtttaagctctttaaatcattttgctttaatgttggcatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttccttatcttgttgatggtttaagctctttaaatcattttgctttaatgttggcatgtc 344

                                                                       
Query: 121 gtgggtgttaaggcctaagtaactcttacttggctagcctgccattataaggaagatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gtgggtgttaaggcctaagtaactcttacttggctagcctgccattataaggaagatttc 284

                                                                       
Query: 181 tcacaggtttctgctgttactggacccttcctaatgccaggataggtgacatattctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcacaggtttctgctgttactggacccttcctaatgccaggataggtgacatattctgtt 224

                                                                       
Query: 241 ctgtctgtgcccatggaaaccaatcacgacagaagtcatggaactgctctgcatagttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ctgtctgtgcccatggaaaccaatcacgacagaagtcatggaactgctctgcatagttac 164

                                                                       
Query: 301 ccacaacaagactggaccagaagcaaccaccaccagcacttcctgtacctgtgtacaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ccacaacaagactggaccagaagcaaccaccaccagcacttcctgtacctgtgtacaaga 104

                                                                       
Query: 361 ttttaagatacaaactgcccctgggacagaccccaacataagagagacacaaaccatttg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ttttatgatacaaactgcccctgggacagaccccaacataagagagacacaaaccatttg 44

                                                      
Query: 421 gaataagacttccattttgagtagtgctcttgtaaagatcagg 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  gaataagacttccattttgagtagtgctcttgtaaagatcagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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