BAC Information

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BAC

Clone NameMSMg01-382P16
Chromosome16 (Build37)
Map Location 36,824,500 - 36,824,980
singlet/doubletsinglet
Overlap geneEaf2
Upstream geneHspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023
Downstream geneIqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382P16.T7 (MSMg01no382_p16.b1)MSMg01-382P16.TJ (MSMg01no382_p16.g1)
ACCAG486755AG486756
length1,151764
length of high quality
(start - end)		---481 (63 - 543)
definitionCHROMAT_FILE: MSMg01no382_p16.b1 PHD_FILE: MSMg01no382_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:53 2005CHROMAT_FILE: MSMg01no382_p16.g1 PHD_FILE: MSMg01no382_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGGTTGGGGCTCGNTTTATGTTCTTCATTCAGATAAAGGTAGATGCTG
ACTGCCNAGTACTCTAATAGTAATCATATGGAATGCATGGATATTCATAC
GCGTGATGTCTTTGTATAGTTCATGACGGGCCGCATGTTGACGTGATTAG
AGACGCGCGAACGTGGCGCAGGTTTATGCACTCTAANTANATATTTAGAG
AAAATAGAACAAGAAGAAACGATGGACACGTGCNTATTTTGCTGCGACAT
TCACACGCGTACCAAACCCCATGTTGGCTTCTGCGAGCCTATGAGGCGTA
GGCGCGTATGAANCAACAGCAAACCGAGAACATCTTAGAGCGAGAGAAGG
ACTAAGACGAGAAATAACATCGTACTTGCTCTGAAGTGTGAGTAGACGAG
ATACGAAGAGGGTGTTGTGAAAGCGGCAGAATAGATAAGAAGAGAAAGTG
ACGCGTTTGAGAACGCGGAGATCACGACGTGCCGGACAGATCTACGACCC
CCATCTAATCATCAACACTCCGACAACGCGAGCAAGGAGCGAACGAGCGA
GCAATAGTATTTGCGCTCGTAGGCCCGTCGTTTGGACGCTGTGAGTCTAC
GGCGGTAAGTTAGCAGAGGGCGACGGTAGGTAAGCTCACTGTGCGACACA
GCGTATTACGAGGAACGAGAGGAGATGCAACTACGCAAGGCACATAGAGC
GAATGAGACTCGCGCTCACAGTAACAAACTACTATTATGATGTCAACGGA
CAGAGATAGAGTGTATCGCTATNACATAGTGCAGGGGTCAGTGGCTGCTC
CAAACAGCTGTCGCGCGACTAAATAATCGCACGTAAAGAAATTGATATGA
CTAGAGCGGATAAGACATAGACGAGATTGCGGATATCATTATAGATAAGA
CAATAACTGACATTTGATCTTCCCACTCTAGCTTTTTCTCTTTCATACAG
AATGTAGAGTATTTGTGAGACGAACGACGTAGTAGACCAAAGGTAACTAA
TAATATCGCGTGAATATCAAAGCTACACAGGCATCACGCGATTGCGAGTC
CGACGGGACGAGCACCCCGCGANACTCATGTCACATTGTCACTCATAAGT
GCTGACTGTGCGAAGCAATAACCACAAAAGGACGCTAGTCACGACGCGAG
N

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATAATTCTATAATCATTATCCCTGTAATCACTTTCAA
GTCATTGGCTATGATATTCCTTGAAACCATTAAATGAATTAAAGTACTTT
AAAATTGTTTCAGCCAAAGTTGATTTTGCTTCCTCTGTATAATATTCATC
ATTTTAACCAACCATCATTATATGAATGGTATAAATATTTTCATTGATAT
TTAGTGGAAATCCTTTAGAACAGACCTCTTTCATCTTCATATAGAGAACT
ACTTACTTCTATATTTGGAAGAGTTATTGTCACCTGTTCACCTTTGCCAA
CCTCAAGATTTCCTTCACAAGAAGTATCAATAGAAGCAGGTTTGAAGTCA
TCTAAAAATAGATATAAATATCAATGTTTATAAGATAGACAATGTATTAC
TCATGACTGTGAACAGAGAGTGACAGAAGCAGCTAAGAGGATTATTTTGA
CTCACTGGGTAGTTTTGTTTTAACTACTTTTATTGTATGTGTATGCATGT
TTTGTTTCCTTGTATGCACGCGCTGGAGCCCAAGGTAGCCAGAAAAGACC
AATGGATCCTCTGGCACTGGGGTTAAAAATAAAAAAAGTGCCATGTTGTG
TATTTAAAACCGATCCAAACCTCTGGAAAATAAAAAGCCCATCCCTAATG
GTAAGTCCCCTGGGGGCCGTTTAAAAATACCACCCCTCCAAACTAGGAGG
GCAGCCCAGTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_p16.g1 MSMg01no382_p16.g1 CHROMAT_FILE:
MSMg01no382_p16.g1 PHD_FILE: MSMg01no382_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:53 2005
         (481 letters)



>mm_chr16_36824300_36825180
          Length = 881

 Score =  930 bits (481), Expect = 0.0
 Identities = 481/481 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataattctataatcattatccctgtaatcactttcaagtcattggctatgatattcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataattctataatcattatccctgtaatcactttcaagtcattggctatgatattcctt 260

                                                                       
Query: 61  gaaaccattaaatgaattaaagtactttaaaattgtttcagccaaagttgattttgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaccattaaatgaattaaagtactttaaaattgtttcagccaaagttgattttgcttc 320

                                                                       
Query: 121 ctctgtataatattcatcattttaaccaaccatcattatatgaatggtataaatattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgtataatattcatcattttaaccaaccatcattatatgaatggtataaatattttc 380

                                                                       
Query: 181 attgatatttagtggaaatcctttagaacagacctctttcatcttcatatagagaactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgatatttagtggaaatcctttagaacagacctctttcatcttcatatagagaactac 440

                                                                       
Query: 241 ttacttctatatttggaagagttattgtcacctgttcacctttgccaacctcaagatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacttctatatttggaagagttattgtcacctgttcacctttgccaacctcaagatttc 500

                                                                       
Query: 301 cttcacaagaagtatcaatagaagcaggtttgaagtcatctaaaaatagatataaatatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcacaagaagtatcaatagaagcaggtttgaagtcatctaaaaatagatataaatatc 560

                                                                       
Query: 361 aatgtttataagatagacaatgtattactcatgactgtgaacagagagtgacagaagcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtttataagatagacaatgtattactcatgactgtgaacagagagtgacagaagcag 620

                                                                       
Query: 421 ctaagaggattattttgactcactgggtagttttgttttaactacttttattgtatgtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaagaggattattttgactcactgggtagttttgttttaactacttttattgtatgtgt 680

            
Query: 481 a 481
           |
Sbjct: 681 a 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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